Evidence map›Paper›PMID 28636595›Full record

ArticleNature2017

Nlrp9b inflammasome restricts rotavirus infection in intestinal epithelial cells.

Shu Zhu, Siyuan Ding, Penghua Wang, Zheng Wei, Wen Pan, Noah W Palm, Yi Yang, Hua Yu, Hua-Bing Li, Geng Wang and 15 more

Abstract read
In one paragraph

Article in Nature, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 261 papers.

0numbers the graph read from it
0cells of the map it votes in
261citing papers in PubMed
20.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

261 citing papers in PubMed, 360 citations in OpenAlex.

  1. The gasdermin family: from pyroptosis mechanisms to therapeutic targets.Signal transduction and targeted therapy · 2026
    Review
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  11. Review
  12. Review
  13. An overview of human inflammasomes: Activation and regulation.Journal of immunology (Baltimore, Md. : 1950) · 2026
    Review
  14. Article
  15. Role of Nod-like Receptors inMicroorganisms · 2026
    Review
  16. Article
  17. Toward targeting of inflammasome signaling in venous thrombosis.Journal of thrombosis and haemostasis : JTH · 2025
    Review
  18. PANoptosis: potential new targets and therapeutic prospects in digestive diseases.Apoptosis : an international journal on programmed cell death · 2025
    Review
  19. Regulation of inflammatory processes by caspases.Nature reviews. Molecular cell biology · 2025
    Review
  20. Review

201 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

25 authors at 4 institutions in 1 country.

Shu ZhuDepartment of Immunobiology, Yale University School of Medicine, New Haven, Connecticut 06520, USA.
Siyuan DingDepartment of Medicine and Department of Microbiology &Immunology, Stanford University School of Medicine, Stanford, California 94305, USA.
Penghua WangDepartment of Microbiology and Immunology, New York Medical College, Valhalla, New York 10595, USA.
Zheng WeiDepartment of Immunobiology, Yale University School of Medicine, New Haven, Connecticut 06520, USA.
Wen PanDepartment of Genetics, Yale University School of Medicine, New Haven, Connecticut 06520, USA.
Noah W PalmDepartment of Immunobiology, Yale University School of Medicine, New Haven, Connecticut 06520, USA.
Yi YangDepartment of Immunobiology, Yale University School of Medicine, New Haven, Connecticut 06520, USA.
Hua YuDepartment of Immunobiology, Yale University School of Medicine, New Haven, Connecticut 06520, USA.
Hua-Bing LiDepartment of Immunobiology, Yale University School of Medicine, New Haven, Connecticut 06520, USA.
Geng WangDepartment of Immunobiology, Yale University School of Medicine, New Haven, Connecticut 06520, USA.
Xuqiu LeiDepartment of Immunobiology, Yale University School of Medicine, New Haven, Connecticut 06520, USA.
Marcel R de ZoeteDepartment of Immunobiology, Yale University School of Medicine, New Haven, Connecticut 06520, USA.
Jun ZhaoDepartment of Immunobiology, Yale University School of Medicine, New Haven, Connecticut 06520, USA.
Yunjiang ZhengDepartment of Immunobiology, Yale University School of Medicine, New Haven, Connecticut 06520, USA.
Haiwei ChenDepartment of Immunobiology, Yale University School of Medicine, New Haven, Connecticut 06520, USA.
Yujiao ZhaoDepartment of Microbiology and Immunology, New York Medical College, Valhalla, New York 10595, USA.
Kellie A JuradoDepartment of Internal Medicine, Yale University School of Medicine, New Haven, Connecticut 06520, USA.
Ningguo FengDepartment of Medicine and Department of Microbiology &Immunology, Stanford University School of Medicine, Stanford, California 94305, USA.
Liang ShanDepartment of Immunobiology, Yale University School of Medicine, New Haven, Connecticut 06520, USA.
Yuval KlugerDepartment of Pathology, Yale University School of Medicine, New Haven, Connecticut 06520, USA.
Jun LuDepartment of Genetics, Yale University School of Medicine, New Haven, Connecticut 06520, USA.
Clara AbrahamDepartment of Internal Medicine, Yale University School of Medicine, New Haven, Connecticut 06520, USA.
Erol FikrigDepartment of Internal Medicine, Yale University School of Medicine, New Haven, Connecticut 06520, USA.
Harry B GreenbergDepartment of Medicine and Department of Microbiology &Immunology, Stanford University School of Medicine, Stanford, California 94305, USA.
Richard A FlavellDepartment of Immunobiology, Yale University School of Medicine, New Haven, Connecticut 06520, USA.
Yale University · USNew York Medical College · USStanford University · USPalo Alto Veterans Institute for Research · US

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Systems investigation of vaccine responses in B cell depleted autoimmune patientsU19AI089992 · NIAID · YALE UNIVERSITY · PI David A. Hafler, RUTH R MONTGOMERY · 2010 to 2026
$50.4M
INTERDISCIPLINARY IMMUNOLOGY TRAINING PROGRAMT32AI007019 · NIAID · YALE UNIVERSITY · PI Carrie L. Lucas, David G. Schatz · 1985 to 2026
$14.4M
Stanford/UNC Biomimetic U19 Research CenterU19AI116484 · NIAID · STANFORD UNIVERSITY · PI AMIEVA, MANUEL R, KUO, CALVIN J · 2015 to 2025
$13.5M
Functional outcomes of inflammatory bowel disease associated variantsR01DK099097 · NIDDK · YALE UNIVERSITY · PI CLARA ABRAHAM · 2013 to 2026
$7.0M
VIRAL GASTROENTERITIS--BASIS OF PROTECTION AND VIRULENCER01AI021362 · NIAID · STANFORD UNIVERSITY · PI GREENBERG, HARRY BERNARD · 1989 to 2014
$5.4M
Integrative Genomic Analyses of Macrophages in Crohns DiseaseR01DK106593 · NIDDK · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI CHO, JUDY H. · 2016 to 2020
$3.8M
Regulation of Rotavirus Replication, Virulence, and Host Range Restriction by the Innate Immune SystemR01AI125249 · NIAID · PALO ALTO VETERANS INSTIT FOR RESEARCH · PI GREENBERG, HARRY BERNARD · 2017 to 2021
$2.1M
The role of NLRP6 and DHX15 in control of infection by RNA virusesR01AI127865 · NIAID · YALE UNIVERSITY · PI FIKRIG, EROL, FLAVELL, RICHARD A · 2018 to 2022
$2.1M
Mechanisms Regulating Innate Immune ResponsesR01AI120369 · NIAID · YALE UNIVERSITY · PI ABRAHAM, CLARA · 2016 to 2020
$2.0M
EFFICIENT SPECTRAL APPROACHES FOR FINDING UNDERLYING STRUCTURES IN BIG DATAR01HG008383 · NHGRI · YALE UNIVERSITY · PI KLUGER, YUVAL · 2016 to 2018
$1.2M
Viral Gastroenteritis: Basis of Virulence and ProtectionR56AI021362 · NIAID · PALO ALTO VETERANS INSTIT FOR RESEARCH · PI GREENBERG, HARRY BERNARD · 2015 to 2015
$506k
BLRD VA I01 BX000158Howard Hughes Medical InstituteNCATS NIH HHS UL1 TR001863NHGRI NIH HHS R01 HG008383NIAID NIH HHS R01 AI021362NIAID NIH HHS R01 AI120369NIAID NIH HHS R01 AI125249NIAID NIH HHS R01 AI127865NIAID NIH HHS R21 AI103807NIAID NIH HHS R56 AI021362NIAID NIH HHS T32 AI007019NIAID NIH HHS U19 AI089992NIAID NIH HHS U19 AI116484NIDDK NIH HHS R01 DK099097NIDDK NIH HHS R01 DK106593
6 · The paper itself

Abstract

Rotavirus, a leading cause of severe gastroenteritis and diarrhoea in young children, accounts for around 215,000 deaths annually worldwide. Rotavirus specifically infects the intestinal epithelial cells in the host small intestine and has evolved strategies to antagonize interferon and NF-κB signalling, raising the question as to whether other host factors participate in antiviral responses in intestinal mucosa. The mechanism by which enteric viruses are sensed and restricted in vivo, especially by NOD-like receptor (NLR) inflammasomes, is largely unknown. Here we uncover and mechanistically characterize the NLR Nlrp9b that is specifically expressed in intestinal epithelial cells and restricts rotavirus infection. Our data show that, via RNA helicase Dhx9, Nlrp9b recognizes short double-stranded RNA stretches and forms inflammasome complexes with the adaptor proteins Asc and caspase-1 to promote the maturation of interleukin (Il)-18 and gasdermin D (Gsdmd)-induced pyroptosis. Conditional depletion of Nlrp9b or other inflammasome components in the intestine in vivo resulted in enhanced susceptibility of mice to rotavirus replication. Our study highlights an important innate immune signalling pathway that functions in intestinal epithelial cells and may present useful targets in the modulation of host defences against viral pathogens.

Indexed as

AnimalsApoptosis Regulatory ProteinsCARD Signaling Adaptor ProteinsCaspase 1DEAD-box RNA HelicasesEpithelial CellsFemaleGasderminsImmunity, InnateInflammasomesInterleukin-18Intestinal MucosaIntestinesIntracellular Signaling Peptides and ProteinsMaleMiceApoptosis Regulatory ProteinsCARD Signaling Adaptor ProteinsCaspase 1CXCR5 protein, mouseDEAD-box RNA HelicasesDhx9 protein, mouseGasderminsGsdmd protein, mouseInflammasomesInterleukin-18Intracellular Signaling Peptides and ProteinsPhosphate-Binding ProteinsPycard protein, mouseReceptors, CXCR5Receptors, G-Protein-CoupledRNA, Double-Stranded

Identifiers

PMID28636595
PMCPMC5787375
OpenAlexW2685260364

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.