Evidence map›Paper›PMID 28636592›Full record

ArticleNature2017

Quantifiable predictive features define epitope-specific T cell receptor repertoires.

Pradyot Dash, Andrew J Fiore-Gartland, Tomer Hertz, George C Wang, Shalini Sharma, Aisha Souquette, Jeremy Chase Crawford, E Bridie Clemens, Thi H O Nguyen, Katherine Kedzierska and 3 more

Abstract read
In one paragraph

Article in Nature, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 581 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
581citing papers in PubMed, 1 pooled it
30.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

581 citing papers in PubMed, 1 synthesis or guideline pooled it, 943 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Article
  4. Gliadin-specific CD4Science advances · 2026
    Article
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  8. Review
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  11. Article
  12. Review
  13. T Cell Thoughts.Immunological reviews · 2026
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Review

521 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 4 countries.

Pradyot DashDepartment of Immunology, St Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.
Andrew J Fiore-GartlandVaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, Washington 98109, USA.
Tomer HertzVaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, Washington 98109, USA.
George C WangDivision of Geriatric Medicine and Gerontology, Biology of Healthy Aging Program, Johns Hopkins University School of Medicine, Baltimore, Maryland 21224, USA.
Shalini SharmaDepartment of Veterinary Physiology and Biochemistry, Lala Lajpat Rai University of Veterinary and Animal Sciences, Hisar, Haryana 125004, India.
Aisha SouquetteDepartment of Immunology, St Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.
Jeremy Chase CrawfordDepartment of Immunology, St Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.
E Bridie ClemensDepartment of Microbiology and Immunology, University of Melbourne, Peter Doherty Institute for Infection and Immunity, Parkville, Victoria 3010, Australia.
Thi H O NguyenDepartment of Microbiology and Immunology, University of Melbourne, Peter Doherty Institute for Infection and Immunity, Parkville, Victoria 3010, Australia.
Katherine KedzierskaDepartment of Microbiology and Immunology, University of Melbourne, Peter Doherty Institute for Infection and Immunity, Parkville, Victoria 3010, Australia.
Nicole L La GrutaDepartment of Microbiology and Immunology, University of Melbourne, Peter Doherty Institute for Infection and Immunity, Parkville, Victoria 3010, Australia.
Philip BradleyDivision of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington 98109, USA.
Paul G ThomasDepartment of Immunology, St Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.
St. Jude Children's Research Hospital · USFred Hutch Cancer Center · USPeter Doherty Institute · AUJohns Hopkins University · USLala Lajpat Rai University of Veterinary and Animal Sciences · INMonash University · AU

Funding

SDMC: HIV Vaccine Trials NetworkUM1AI068635 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Peter B. Gilbert, Yunda Huang · 2011 to 2026
$385.9M
Technological Assessment and Solutions Core - RC4P30AG021334 · NIA · JOHNS HOPKINS UNIVERSITY · PI Jeremy D Walston · 2003 to 2026
$33.2M
Mechanisms to diversify repertoire and modify T cell activity after infectionR01AI107625 · NIAID · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI THOMAS, PAUL G. · 2013 to 2017
$2.3M
FHCRC High-Performance Computing ClusterS10OD020069 · OD · FRED HUTCHINSON CANCER RESEARCH CENTER · PI KOOPERBERG, CHARLES L · 2015 to 2015
$600k
CMV infection and T-cell receptor diversity in the pathogenesis of frailtyK23AG033113 · NIA · JOHNS HOPKINS UNIVERSITY · PI WANG, GEORGE C. · 2010 to 2012
$484k
NIAID NIH HHS R01 AI107625NIAID NIH HHS UM1 AI068635NIA NIH HHS K23 AG033113NIA NIH HHS P30 AG021334NIH HHS S10 OD020069
6 · The paper itself

Abstract

T cells are defined by a heterodimeric surface receptor, the T cell receptor (TCR), that mediates recognition of pathogen-associated epitopes through interactions with peptide and major histocompatibility complexes (pMHCs). TCRs are generated by genomic rearrangement of the germline TCR locus, a process termed V(D)J recombination, that has the potential to generate marked diversity of TCRs (estimated to range from 10

Indexed as

AlgorithmsAnimalsCD8-Positive T-LymphocytesCluster AnalysisEpitopes, T-LymphocyteFemaleHumansMaleMice, Inbred C57BLReceptors, Antigen, T-CellReceptors, Antigen, T-Cell, alpha-betaSubstrate SpecificityV(D)J RecombinationEpitopes, T-LymphocyteReceptors, Antigen, T-CellReceptors, Antigen, T-Cell, alpha-beta

Identifiers

PMID28636592
PMCPMC5616171
OpenAlexW2671261300

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.