Evidence map›Paper›PMID 28635949›Full record

ArticleEuropean journal of human genetics : EJHG2017

Non-coding variants contribute to the clinical heterogeneity of TTR amyloidosis.

Andrea Iorio, Antonella De Lillo, Flavio De Angelis, Marco Di Girolamo, Marco Luigetti, Mario Sabatelli, Luca Pradotto, Alessandro Mauro, Anna Mazzeo, Claudia Stancanelli and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in European journal of human genetics : EJHG, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it, 39 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Article
  5. Review
  6. Review
  7. Review
  8. Article
  9. Review
  10. The integration of genetically-regulated transcriptomics and electronic health records highlights a pattern of medical outcomes related to increased hepaticAmyloid : the international journal of experimental and clinical investigation : the official journal of the International Society of Amyloidosis · 2022
    Article
  11. Current and Emerging Therapies for Hereditary Transthyretin Amyloidosis: Strides Towards a Brighter Future.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2021
    Review
  12. Epigenomic Profiles of African-AmericanCirculation. Genomic and precision medicine · 2021
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Genetic Infiltrative Cardiomyopathies.Heart failure clinics · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 10 institutions in 3 countries.

Andrea IorioDepartment of Biology, University of Rome Tor Vergata, Rome, Italy.
Antonella De LilloDepartment of Biology, University of Rome Tor Vergata, Rome, Italy.
Flavio De AngelisDepartment of Biology, University of Rome Tor Vergata, Rome, Italy.
Marco Di GirolamoClinical Pathophysiology Center, AFaR Foundation - 'San Giovanni Calibita' Fatebenefratelli Hospital, Rome, Italy.
Marco LuigettiDepartment of Geriatrics, Institute of Neurology, Catholic University of the Sacred Heart, Fondazione Policlinico Universitario A. Gemelli, Rome, Italy.
Mario Sabatelli'Centro Clinico NEMO', Rome, Italy.
Luca PradottoDivision of Neurology and Neurorehabilitation, San Giuseppe Hospital, IRCCS-Istituto Auxologico Italiano, Piancavallo (VB), Italy.
Alessandro MauroDivision of Neurology and Neurorehabilitation, San Giuseppe Hospital, IRCCS-Istituto Auxologico Italiano, Piancavallo (VB), Italy.
Anna MazzeoDepartment of Clinical and Experimental Medicine, University of Messina, Messina, Italy.
Claudia StancanelliUnit of Neurology, Department of Clinical and Experimental Medicine, University of Messina, Messina, Italy.
Federico PerfettoRegional Amyloid Centre, Azienda Ospedaliero-Universitaria Careggi, Florence, Italy.
Sabrina FrusconiGenetic Diagnostics Unit, Laboratory Department, Careggi University Hospital, Florence, Italy.
Filomena MyDivision of Neurology, 'Vito Fazzi Hospital', Lecce, Italy.
Dario ManfellottoClinical Pathophysiology Center, AFaR Foundation - 'San Giovanni Calibita' Fatebenefratelli Hospital, Rome, Italy.
Maria FuciarelliDepartment of Biology, University of Rome Tor Vergata, Rome, Italy.
Renato PolimantiDepartment of Psychiatry, Yale University School of Medicine, West Haven, CT, USA.
University of Rome Tor Vergata · ITAzienda Ospedaliero-Universitaria Careggi · ITFatebenefratelli Hospital · ITUniversity of Messina · ITCentro Clinico Nemo · ITIRCCS Istituto Auxologico Italiano · ITOspedale Vito Fazzi · ITUniversità Cattolica del Sacro Cuore · ITUniversity of Turin · ITYale University · US

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
NCATS NIH HHS UL1 TR001863
6 · The paper itself

Abstract

Coding mutations in TTR gene cause a rare hereditary form of systemic amyloidosis, which has a complex genotype-phenotype correlation. We investigated the role of non-coding variants in regulating TTR gene expression and consequently amyloidosis symptoms. We evaluated the genotype-phenotype correlation considering the clinical information of 129 Italian patients with TTR amyloidosis. Then, we conducted a re-sequencing of TTR gene to investigate how non-coding variants affect TTR expression and, consequently, phenotypic presentation in carriers of amyloidogenic mutations. Polygenic scores for genetically determined TTR expression were constructed using data from our re-sequencing analysis and the GTEx (Genotype-Tissue Expression) project. We confirmed a strong phenotypic heterogeneity across coding mutations causing TTR amyloidosis. Considering the effects of non-coding variants on TTR expression, we identified three patient clusters with specific expression patterns associated with certain phenotypic presentations, including late onset, autonomic neurological involvement, and gastrointestinal symptoms. This study provides novel data regarding the role of non-coding variation and the gene expression profiles in patients affected by TTR amyloidosis, also putting forth an approach that could be used to investigate the mechanisms at the basis of the genotype-phenotype correlation of the disease.

Indexed as

MutationPhenotypeAmyloidosisFemaleGenotypeHeterozygoteHumansMalePrealbuminPrealbumin

Identifiers

PMID28635949
PMCPMC5558178
OpenAlexW2666433205

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.