Evidence map›Paper›PMID 28635594›Full record

ArticleeLife2017

Translation repression via modulation of the cytoplasmic poly(A)-binding protein in the inflammatory response.

Xu Zhang, Xiaoli Chen, Qiuying Liu, Shaojie Zhang, Wenqian Hu

Open access · goldAbstract read
In one paragraph

Article in eLife, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 51 citations in OpenAlex.

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  17. RepressingeLife · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Xu ZhangDepartment of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, United States.
Xiaoli ChenDepartment of Computer Science, University of Central Florida, Orlando, United States.
Qiuying LiuDepartment of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, United States.
Shaojie ZhangDepartment of Computer Science, University of Central Florida, Orlando, United States.ORCID 0000-0002-4051-5549
Wenqian HuDepartment of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, United States.ORCID 0000-0003-3577-3604
Mayo Clinic · USUniversity of Central Florida · US

Funding

RNA Structural Motif Analysis Revisited: Towards a Systematic Understanding of Noncoding RNA as Modular BiomoleculesR01GM102515 · NIGMS · UNIVERSITY OF CENTRAL FLORIDA · PI ZHANG, SHAOJIE, ZHONG, CUNCONG · 2012 to 2025
$2.3M
Regulation of Erythroid Terminal Differentiation by Long Noncoding RNAsR00HL118157 · NHLBI · MAYO CLINIC ROCHESTER · PI HU, WENQIAN · 2016 to 2018
$747k
NHLBI NIH HHS R00 HL118157NIGMS NIH HHS R01 GM102515
6 · The paper itself

Abstract

Gene expression is precisely regulated during the inflammatory response to control infection and limit the detrimental effects of inflammation. Here, we profiled global mRNA translation dynamics in the mouse primary macrophage-mediated inflammatory response and identified hundreds of differentially translated mRNAs. These mRNAs' 3'UTRs have enriched binding motifs for several RNA-binding proteins, which implies extensive translational regulatory networks. We characterized one such protein, Zfp36, as a translation repressor. Using primary macrophages from a Zfp36-V5 epitope tagged knock-in mouse generated by CRISPR/Cas9-mediated genome editing, we found that the endogenous Zfp36 directly interacts with the cytoplasmic poly(A)-binding protein. Importantly, this interaction is required for the translational repression of Zfp36's target mRNAs in resolving inflammation. Altogether, these results uncovered critical roles of translational regulations in controlling appropriate gene expression during the inflammatory response and revealed a new biologically relevant molecular mechanism of translational repression via modulating the cytoplasmic poly(A)-binding protein.

Indexed as

Protein Biosynthesis3' Untranslated RegionsAnimalsBinding SitesCells, CulturedGene Expression ProfilingGene Knock-In TechniquesInflammationMacrophagesMicePoly(A)-Binding ProteinsRepressor ProteinsStaining and LabelingTristetraprolin3' Untranslated RegionsPoly(A)-Binding ProteinsRepressor ProteinsTristetraprolinZfp36 protein, mousebiochemistryinflammatory responsemousepoly(A) tail binding proteinpost-transcriptional regulationRNA-binding proteintranslational control

Identifiers

PMID28635594
PMCPMC5507668
OpenAlexW2721444873

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.