ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2017
Genetic and transcriptomic analyses of lignin- and lodging-related traits in Brassica napus.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.
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Who cites it
25 citing papers in PubMed, 74 citations in OpenAlex.
- Integrative QTL mapping and transcriptomic profiling uncover molecular mechanisms underlying lodging resistance inHorticulture research · 2026Review
- A MaERF110-MaMYB308 Transcriptional Module Negatively Regulates Lignin-Mediated Defence Against Fusarium Wilt in Banana.Plant biotechnology journal · 2026Article
- Comparing Transcriptome and Stem Anatomy Analysis Reveals That the Phenylpropanoid Pathway Is a Key Driving Factor for Lodging Resistance inPlants (Basel, Switzerland) · 2026Article
- Integrating multiomic resources and gene expression studies to identify candidates for engineering climate-resilientFrontiers in plant science · 2026Review
- Genome-Wide Association Study to Identify Soybean Lodging Resistance Loci and Candidate Genes.International journal of molecular sciences · 2025Article
- Host cell wall composition and localized microenvironment implicated in resistance to basal stem degradation by lettuce drop (Sclerotinia minor).BMC plant biology · 2024Article
- Targeted mutagenesis of flavonoid biosynthesis pathway genes reveals functional divergence in seed coat colour, oil content and fatty acid composition in Brassica napus L.Plant biotechnology journal · 2024Article
- An integrated QTL mapping and transcriptome sequencing provides further molecular insights and candidate genes for stem strength in rapeseed (Brassica napus L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Genetic analyses and prediction for lodging‑related traits in a diverse Iranian hexaploid wheat collection.Scientific reports · 2024Article
- Genetic mapping of some key plant architecture traits in Brassica juncea using a doubled haploid population derived from a cross between two distinct lines: vegetable type Tumida and oleiferous Varuna.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023Article
- Integrating biochemical and anatomical characterizations with transcriptome analysis to dissect superior stem strength of ZS11 (Frontiers in plant science · 2023Article
- The Transcriptome and Metabolome Reveal the Potential Mechanism of Lodging Resistance in Intergeneric Hybrids betweenInternational journal of molecular sciences · 2022Article
- Integration of GWAS and transcriptome analyses to identify SNPs and candidate genes for aluminum tolerance in rapeseed (Brassica napus L.).BMC plant biology · 2022Article
- QTL Identification for Stem Fiber, Strength and Rot Resistance in a DH Population from an Alien Introgression ofPlants (Basel, Switzerland) · 2022Article
- Knockout of the lignin pathway gene BnF5H decreases the S/G lignin compositional ratio and improves Sclerotinia sclerotiorum resistance in Brassica napus.Plant, cell & environment · 2022Article
- Shading decreases lodging resistance of wheat under different planting densities by altering lignin monomer composition of stems.Frontiers in plant science · 2022Article
- High-density genetic linkage mapping reveals low stability of QTLs across environments for economic traits inFrontiers in plant science · 2022Article
- Integration of transcriptome and metabolome analyses reveals key lodging-resistance-related genes and metabolic pathways in maize.Frontiers in genetics · 2022Article
- Comparative transcriptomic analysis of seed coats with high and low lignin contents reveals lignin and flavonoid biosynthesis in Brassica napus.BMC plant biology · 2021Article
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Corrections and comments
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Authors and funding
12 authors at 2 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
key messageCandidate genes associated with lignin and lodging traits were identified by combining phenotypic, genotypic, and gene expression data in B. napus. Brassica napus is one of the world's most important oilseed crops, but its yield can be dramatically reduced by lodging, bending, and falling of its vertical stems. Lignin has been shown to contribute to stem mechanical strength. In this study, we found that the syringyl/guaiacyl (S/G) monolignol ratio exhibits a significant negative correlation with disease and lodging resistance. A total of 92 and 50 SNP and SSR loci, respectively, were found to be significantly associated with five traits, breaking force, breaking strength, lodging coefficient, acid detergent lignin content, and the S/G monolignol ratio using GWAS. To identify novel genes involved in lignin biosynthesis, transcriptome sequencing of high- (H) and low (L)-ADL content accessions was performed. The up-regulated genes were mainly involved in glycoside catabolic processes (especially glucosinolate catabolism) and cell wall biogenesis, while down-regulated genes were involved in glucosinolate biosynthesis, indicating that crosstalk exists between glucosinolate metabolic processes and lignin biosynthesis. Integrating this differential expression with the GWAS analysis, we identified four candidate genes regulating lignin, including glycosyl hydrolase (BnaA01g00480D), CYT1 (BnaA04g22820D), and two encoding transcription factors, SHINE1 (ERF family) and DAR6 (LIM family). This study provides insight into the genetic control of lodging and lignin in B. napus.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.