Evidence map›Paper›PMID 28634407›Full record

ArticleScientific reports2017

Analysis of survival and hatching transcriptomes from potato cyst nematodes, Globodera rostochiensis and G. pallida.

Marc-Olivier Duceppe, Joël Lafond-Lapalme, Juan Emilio Palomares-Rius, Michaël Sabeh, Vivian Blok, Peter Moffett, Benjamin Mimee

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
7.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Genomic Analyses ofPathogens (Basel, Switzerland) · 2021
    Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Impacts of Root Metabolites on Soil Nematodes.Frontiers in plant science · 2019
    Review
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

Marc-Olivier DuceppeAgriculture and Agri-Food Canada, 430, Boulevard Gouin Saint-Jean-sur-Richelieu (Québec), J3B 3E6, Québec, Canada.
Joël Lafond-LapalmeAgriculture and Agri-Food Canada, 430, Boulevard Gouin Saint-Jean-sur-Richelieu (Québec), J3B 3E6, Québec, Canada.
Juan Emilio Palomares-RiusCell and Molecular Sciences, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, United Kingdom.
Michaël SabehAgriculture and Agri-Food Canada, 430, Boulevard Gouin Saint-Jean-sur-Richelieu (Québec), J3B 3E6, Québec, Canada.
Vivian BlokCell and Molecular Sciences, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, United Kingdom.
Peter MoffettDépartement de Biologie, Université de Sherbrooke, Sherbrooke, J1K 2R1, Canada.
Benjamin MimeeAgriculture and Agri-Food Canada, 430, Boulevard Gouin Saint-Jean-sur-Richelieu (Québec), J3B 3E6, Québec, Canada. benjamin.mimee@agr.gc.ca.
Agriculture and Agri-Food Canada · CAJames Hutton Institute · GBUniversité de Sherbrooke · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Potato cyst nematodes (PCNs), Globodera rostochiensis and G. pallida, cause important economic losses. They are hard to manage because of their ability to remain dormant in soil for many years. Although general knowledge about these plant parasitic nematodes has considerably increased over the past decades, very little is known about molecular events involved in cyst dormancy and hatching, two key steps of their development. Here, we have studied the progression of PCN transcriptomes from dry cysts to hatched juveniles using RNA-Seq. We found that several cell detoxification-related genes were highly active in the dry cysts. Many genes linked to an increase of calcium and water uptake were up-regulated during transition from dormancy to hydration. Exposure of hydrated cysts to host plant root exudates resulted in different transcriptional response between species. After 48 h of exposure, G. pallida cysts showed no significant modulation of gene expression while G. rostochiensis had 278 differentially expressed genes. The first G. rostochiensis significantly up-regulated gene was observed after 8 h and was coding for a transmembrane metalloprotease. This enzyme is able to activate/inactivate peptide hormones and could be involved in a cascade of events leading to hatching. Several known effector genes were also up-regulated during hatching.

Indexed as

TranscriptomeAnimalsCluster AnalysisComputational BiologyGene Expression ProfilingGene Expression RegulationMolecular Sequence AnnotationSolanum tuberosumTylenchoidea

Identifiers

PMID28634407
PMCPMC5478601
OpenAlexW2632546915

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.