Evidence map›Paper›PMID 28634367›Full record

ArticleScientific reports2017

Proteomic analysis reveals large amounts of decomposition enzymes and major metabolic pathways involved in algicidal process of Trametes versicolor F21a.

Xueyan Gao, Congyan Wang, Wei Dai, Shenrong Ren, Fang Tao, Xingbing He, Guomin Han, Wei Wang

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Transcriptional Analysis ofInternational journal of environmental research and public health · 2021
    Article
  6. Article
  7. Article
  8. Mycoremediation: Expunging environmental pollutants.Biotechnology reports (Amsterdam, Netherlands) · 2020
    Review
  9. Article
  10. Article
  11. Article
  12. The Algicidal FungusFrontiers in microbiology · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Xueyan GaoSchool of Life Sciences, Anhui Agricultural University, Hefei, 230036, China.
Congyan WangInstitute of Environment and Ecology, Academy of Environmental Health and Ecological Security & School of the Environment and Safety Engineering, Jiangsu University, Zhenjiang, 212013, China.ORCID 0000-0002-6132-3319
Wei DaiSchool of Life Sciences, Anhui Agricultural University, Hefei, 230036, China.
Shenrong RenSchool of Life Sciences, Anhui Agricultural University, Hefei, 230036, China.
Fang TaoSchool of Life Sciences, Anhui Agricultural University, Hefei, 230036, China.
Xingbing HeCollege of Biology and Environmental Sciences, Jishou University, Jishou, 416000, China.
Guomin HanSchool of Life Sciences, Anhui Agricultural University, Hefei, 230036, China. guominhan@ahau.edu.cn.
Wei WangSchool of Life Sciences, Anhui Agricultural University, Hefei, 230036, China. wangweisys@ahau.edu.cn.
Anhui Agricultural University · CNJiangsu University · CNJishou University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A recent algicidal mode indicates that fungal mycelia can wrap and eliminate almost all co-cultivated algal cells within a short time span. However, the underlying molecular mechanism is rarely understood. We applied proteomic analysis to investigate the algicidal process of Trametes versicolor F21a and identified 3,754 fungal proteins. Of these, 30 fungal enzymes with endo- or exoglycosidase activities such as β-1,3-glucanase, α-galactosidase, α-glucosidase, alginate lyase and chondroitin lyase were significantly up-regulated. These proteins belong to Glycoside Hydrolases, Auxiliary Activities, Carbohydrate Esterases and Polysaccharide Lyases, suggesting that these enzymes may degrade lipopolysaccharides, peptidoglycans and alginic acid of algal cells. Additionally, peptidase, exonuclease, manganese peroxidase and cytochrome c peroxidase, which decompose proteins and DNA or convert other small molecules of algal cells, could be other major decomposition enzymes. Gene Ontology and KEGG pathway enrichment analysis demonstrated that pyruvate metabolism and tricarboxylic acid cycle pathways play a critical role in response to adverse environment via increasing energy production to synthesize lytic enzymes or uptake molecules. Carbon metabolism, selenocompound metabolism, sulfur assimilation and metabolism, as well as several amino acid biosynthesis pathways could play vital roles in the synthesis of nutrients required by fungal mycelia.

Indexed as

AntibiosisProteomeProteomicsBiomassChlorophyllChromatography, LiquidComputational BiologyCyanobacteriaFungal ProteinsMetabolic Networks and PathwaysTandem Mass SpectrometryTrametesChlorophyllFungal ProteinsProteome

Identifiers

PMID28634367
PMCPMC5478636
OpenAlexW2642195895

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.