Evidence map›Paper›PMID 28631755›Full record

ArticleNature communications2017

Construction of a synthetic metabolic pathway for biosynthesis of the non-natural methionine precursor 2,4-dihydroxybutyric acid.

Thomas Walther, Christopher M Topham, Romain Irague, Clément Auriol, Audrey Baylac, Hélène Cordier, Clémentine Dressaire, Luce Lozano-Huguet, Nathalie Tarrat, Nelly Martineau and 7 more

Abstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed.

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  18. Frontiers in bioengineering and biotechnology · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Thomas WaltherLISBP, Université de Toulouse, CNRS, INRA, INSA, Toulouse, France, 135 Avenue de Rangueil, F-31077 Toulouse, France.
Christopher M TophamLISBP, Université de Toulouse, CNRS, INRA, INSA, Toulouse, France, 135 Avenue de Rangueil, F-31077 Toulouse, France.
Romain IragueLISBP, Université de Toulouse, CNRS, INRA, INSA, Toulouse, France, 135 Avenue de Rangueil, F-31077 Toulouse, France.
Clément AuriolLISBP, Université de Toulouse, CNRS, INRA, INSA, Toulouse, France, 135 Avenue de Rangueil, F-31077 Toulouse, France.
Audrey BaylacLISBP, Université de Toulouse, CNRS, INRA, INSA, Toulouse, France, 135 Avenue de Rangueil, F-31077 Toulouse, France.
Hélène CordierTWB, 3 rue des Satellites, Canal Biotech Building 2, Toulouse F-31400, France.
Clémentine DressaireLISBP, Université de Toulouse, CNRS, INRA, INSA, Toulouse, France, 135 Avenue de Rangueil, F-31077 Toulouse, France.
Luce Lozano-HuguetLISBP, Université de Toulouse, CNRS, INRA, INSA, Toulouse, France, 135 Avenue de Rangueil, F-31077 Toulouse, France.
Nathalie TarratLISBP, Université de Toulouse, CNRS, INRA, INSA, Toulouse, France, 135 Avenue de Rangueil, F-31077 Toulouse, France.
Nelly MartineauLISBP, Université de Toulouse, CNRS, INRA, INSA, Toulouse, France, 135 Avenue de Rangueil, F-31077 Toulouse, France.
Marion StodelLISBP, Université de Toulouse, CNRS, INRA, INSA, Toulouse, France, 135 Avenue de Rangueil, F-31077 Toulouse, France.
Yannick MalbertLISBP, Université de Toulouse, CNRS, INRA, INSA, Toulouse, France, 135 Avenue de Rangueil, F-31077 Toulouse, France.
Marc MaestracciAdisseo SA, Antony Parc II, 10 Place General de Gaulle, Antony F-92160, France.
Robert HuetAdisseo SA, Antony Parc II, 10 Place General de Gaulle, Antony F-92160, France.
Isabelle AndréLISBP, Université de Toulouse, CNRS, INRA, INSA, Toulouse, France, 135 Avenue de Rangueil, F-31077 Toulouse, France.
Magali Remaud-SiméonLISBP, Université de Toulouse, CNRS, INRA, INSA, Toulouse, France, 135 Avenue de Rangueil, F-31077 Toulouse, France.
Jean Marie FrançoisLISBP, Université de Toulouse, CNRS, INRA, INSA, Toulouse, France, 135 Avenue de Rangueil, F-31077 Toulouse, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

2,4-Dihydroxybutyric acid (DHB) is a molecule with considerable potential as a versatile chemical synthon. Notably, it may serve as a precursor for chemical synthesis of the methionine analogue 2-hydroxy-4-(methylthio)butyrate, thus, targeting a considerable market in animal nutrition. However, no natural metabolic pathway exists for the biosynthesis of DHB. Here we have therefore conceived a three-step metabolic pathway for the synthesis of DHB starting from the natural metabolite malate. The pathway employs previously unreported malate kinase, malate semialdehyde dehydrogenase and malate semialdehyde reductase activities. The kinase and semialdehyde dehydrogenase activities were obtained by rational design based on structural and mechanistic knowledge of candidate enzymes acting on sterically cognate substrates. Malate semialdehyde reductase activity was identified from an initial screening of several natural enzymes, and was further improved by rational design. The pathway was expressed in a minimally engineered Escherichia coli strain and produces 1.8 g l

Indexed as

Metabolic Networks and PathwaysAldehyde OxidoreductasesButylene GlycolsButyratesEscherichia coliGlucoseMalate DehydrogenaseMetabolic EngineeringMethionineModels, MolecularMutagenesis, Site-DirectedPhosphotransferasesSynthetic BiologyThermodynamics2,4-dihydroxybutyrateAldehyde OxidoreductasesButylene GlycolsButyratesGlucoseMalate Dehydrogenasemalate dehydrogenase (decarboxylating)MethioninePhosphotransferases

Identifiers

PMID28631755
PMCPMC5481828

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.