Evidence map›Paper›PMID 28630873›Full record

ArticleBioMed research international2017

An Integrative Developmental Genomics and Systems Biology Approach to Identify an In Vivo Sox Trio-Mediated Gene Regulatory Network in Murine Embryos.

Wenqing Jean Lee, Sumantra Chatterjee, Sook Peng Yap, Siew Lan Lim, Xing Xing, Petra Kraus, Wenjie Sun, Xiaoming Hu, V Sivakamasundari, Hsiao Yun Chan and 3 more

Open access · hybridAbstract read
In one paragraph

Article in BioMed research international, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 16 citations in OpenAlex.

  1. Review
  2. Article
  3. Frontiers in molecular biosciences · 2022
    Article
  4. Histone ChIP-Seq identifies differential enhancer usage during chondrogenesis as critical for defining cell-type specificity.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2020
    Article
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 4 countries.

Wenqing Jean LeeGenome Institute of Singapore, 60 Biopolis Street, Singapore 138672.
Sumantra ChatterjeeMcKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, 733 N. Broadway, Baltimore, MD 21205, USA.
Sook Peng YapApta Biosciences Pte Ltd, 31 Biopolis Way, Singapore 138669.
Siew Lan LimGenome Institute of Singapore, 60 Biopolis Street, Singapore 138672.
Xing XingGenome Institute of Singapore, 60 Biopolis Street, Singapore 138672.
Petra KrausDepartment of Biology, Clarkson University, 8 Clarkson Avenue, Potsdam, NY 13699, USA.
Wenjie SunGenome Institute of Singapore, 60 Biopolis Street, Singapore 138672.
Xiaoming HuGenome Institute of Singapore, 60 Biopolis Street, Singapore 138672.
V SivakamasundariThe Jackson Laboratory for Genomic Medicine, 10 Discovery Drive, Farmington, CT 06030, USA.
Hsiao Yun ChanGenome Institute of Singapore, 60 Biopolis Street, Singapore 138672.
Prasanna R KolatkarQatar Biomedical Research Institute, Hamad Bin Khalifa University, Qatar Foundation, P.O. Box 5825, Doha, Qatar.
Shyam PrabhakarGenome Institute of Singapore, 60 Biopolis Street, Singapore 138672.
Thomas LufkinDepartment of Biology, Clarkson University, 8 Clarkson Avenue, Potsdam, NY 13699, USA.ORCID 0000-0002-7902-4771
Genome Institute of Singapore · SGClarkson University · USHamad bin Khalifa University · QAJackson Laboratory · USJohns Hopkins University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Embryogenesis is an intricate process involving multiple genes and pathways. Some of the key transcription factors controlling specific cell types are the

Indexed as

Systems BiologyAnimalsEmbryo, MammalianGene Expression Regulation, DevelopmentalMiceOrganogenesisSOX Transcription FactorsZebrafishSOX Transcription Factors

Identifiers

PMID28630873
PMCPMC5467288
OpenAlexW2617912447

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.