ArticlePeerJ2017
Putative archaeal viruses from the mesopelagic ocean.
Article in PeerJ, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.
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Who cites it
30 citing papers in PubMed, 54 citations in OpenAlex.
- Phage quest: a beginner's guide to explore viral diversity in the prokaryotic world.Briefings in bioinformatics · 2025Review
- Insights Into Phylogeny, Diversity and Functional Potential of Poseidoniales Viruses.Environmental microbiology · 2025Article
- MArVD2: a machine learning enhanced tool to discriminate between archaeal and bacterial viruses in viral datasets.ISME communications · 2023Article
- Diversity, distribution, and functional potentials of magroviruses from marine and brackish waters.Frontiers in microbiology · 2023Article
- Metagenomic analysis reveals unexplored diversity of archaeal virome in the human gut.Nature communications · 2022Article
- Ecogenomics reveals viral communities across the Challenger Deep oceanic trench.Communications biology · 2022Article
- Viral community analysis in a marine oxygen minimum zone indicates increased potential for viral manipulation of microbial physiological state.The ISME journal · 2022Article
- Unexpected myriad of co-occurring viral strains and species in one of the most abundant and microdiverse viruses on Earth.The ISME journal · 2022Article
- iVirus 2.0: Cyberinfrastructure-supported tools and data to power DNA virus ecology.ISME communications · 2021Review
- Diversity, taxonomy, and evolution of archaeal viruses of the class Caudoviricetes.PLoS biology · 2021Article
- Lytic archaeal viruses infect abundant primary producers in Earth's crust.Nature communications · 2021Article
- RaFAH: Host prediction for viruses of Bacteria and Archaea based on protein content.Patterns (New York, N.Y.) · 2021Article
- Interaction dynamics and virus-host range for estuarine actinophages captured by epicPCR.Nature microbiology · 2021Article
- VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses.Microbiome · 2021Article
- Microbial Ecology of Oxygen Minimum Zones Amidst Ocean Deoxygenation.Frontiers in microbiology · 2021Review
- Viral elements and their potential influence on microbial processes along the permanently stratified Cariaco Basin redoxcline.The ISME journal · 2020Article
- Seasonal and diel patterns of abundance and activity of viruses in the Red Sea.Proceedings of the National Academy of Sciences of the United States of America · 2020Article
- The Gut Virome Database Reveals Age-Dependent Patterns of Virome Diversity in the Human Gut.Cell host & microbe · 2020Article
- The spinal cord-gut-immune axis as a master regulator of health and neurological function after spinal cord injury.Experimental neurology · 2020Review
- Charting the diversity of uncultured viruses of Archaea and Bacteria.BMC biology · 2019Article
Corrections and comments
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Authors and funding
8 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Oceanic viruses that infect bacteria, or phages, are known to modulate host diversity, metabolisms, and biogeochemical cycling, while the viruses that infect marine Archaea remain understudied despite the critical ecosystem roles played by their hosts. Here we introduce "MArVD", for Metagenomic Archaeal Virus Detector, an annotation tool designed to identify putative archaeal virus contigs in metagenomic datasets. MArVD is made publicly available through the online iVirus analytical platform. Benchmarking analysis of MArVD showed it to be >99% accurate and 100% sensitive in identifying the 127 known archaeal viruses among the 12,499 viruses in the VirSorter curated dataset. Application of MArVD to 10 viral metagenomes from two depth profiles in the Eastern Tropical North Pacific (ETNP) oxygen minimum zone revealed 43 new putative archaeal virus genomes and large genome fragments ranging in size from 10 to 31 kb. Network-based classifications, which were consistent with marker gene phylogenies where available, suggested that these putative archaeal virus contigs represented six novel candidate genera. Ecological analyses, via fragment recruitment and ordination, revealed that the diversity and relative abundances of these putative archaeal viruses were correlated with oxygen concentration and temperature along two OMZ-spanning depth profiles, presumably due to structuring of the host Archaea community. Peak viral diversity and abundances were found in surface waters, where
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.