ArticleScientific reports2017
Spatio-temporal analysis of coding and long noncoding transcripts during maize endosperm development.
Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
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Who cites it
13 citing papers in PubMed.
- Long Noncoding RNAs as Emerging Regulators of Seed Development, Germination, and Senescence.International journal of molecular sciences · 2025Review
- Dynamic atlas of histone modifications and gene regulatory networks in endosperm of bread wheat.Nature communications · 2024Article
- Review
- Analysis of lncRNAs inNon-coding RNA · 2023Article
- Review
- Genome-wide identification and characterization of lncRNAs in sunflower endosperm.BMC plant biology · 2022Article
- Molecular mechanisms of maize endosperm transfer cell development.Plant cell reports · 2022Review
- Maize unstable factor for orange1 is essential for endosperm development and carbohydrate accumulation.Plant physiology · 2021Article
- Identification and characterization of long non-coding RNA (lncRNA) in the developing seeds of Jatropha curcas.Scientific reports · 2020Article
- An Overview of Methodologies in Studying lncRNAs in the High-Throughput Era: When Acronyms ATTACK!Methods in molecular biology (Clifton, N.J.) · 2019Article
- Identification of Long Noncoding RNAs in the Developing Endosperm of Maize.Methods in molecular biology (Clifton, N.J.) · 2019Article
- Unveiling gibberellin-responsive coding and long noncoding RNAs in maize.Plant molecular biology · 2018Article
- Genome-wide identification and characterization of mRNAs and lncRNAs involved in cold stress in the wild banana (Musa itinerans).PloS one · 2018Article
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Authors and funding
6 authors.
Funding
Abstract
The maize endosperm consists of three major compartmentalized cell types: the starchy endosperm (SE), the basal endosperm transfer cell layer (BETL), and the aleurone cell layer (AL). Differential genetic programs are activated in each cell type to construct functionally and structurally distinct cells. To compare gene expression patterns involved in maize endosperm cell differentiation, we isolated transcripts from cryo-dissected endosperm specimens enriched with BETL, AL, or SE at 8, 12, and 16 days after pollination (DAP). We performed transcriptome profiling of coding and long noncoding transcripts in the three cell types during differentiation and identified clusters of the transcripts exhibiting spatio-temporal specificities. Our analysis uncovered that the BETL at 12 DAP undergoes the most dynamic transcriptional regulation for both coding and long noncoding transcripts. In addition, our transcriptome analysis revealed spatio-temporal regulatory networks of transcription factors, imprinted genes, and loci marked with histone H3 trimethylated at lysine 27. Our study suggests that various regulatory mechanisms contribute to the genetic networks specific to the functions and structures of the cell types of the endosperm.
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