Evidence map›Paper›PMID 28630422›Full record

ArticleScientific reports2017

Basic surface features of nuclear FKBPs facilitate chromatin binding.

Andrew Leung, Francy-Pesek Jardim, Neda Savic, Yoan R Monneau, Rodrigo González-Romero, Geoff Gudavicius, Jose M Eirin-Lopez, Till Bartke, Cameron D Mackereth, Juan Ausió and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Article
  3. FKBP25 participates in DNA double-strand break repair.Biochemistry and cell biology = Biochimie et biologie cellulaire · 2020
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 4 countries.

Andrew LeungDepartment of Biochemistry & Microbiology, University of Victoria, Victoria, BC V8W 3P6, Canada.
Francy-Pesek JardimDepartment of Biochemistry & Microbiology, University of Victoria, Victoria, BC V8W 3P6, Canada.
Neda SavicDepartment of Biochemistry & Microbiology, University of Victoria, Victoria, BC V8W 3P6, Canada.
Yoan R MonneauUniv. Bordeaux, Inserm, CNRS, ARNA Laboratory, U1212, UMR 5320, Institut Européen de Chimie et Biologie, 2 rue Robert Escarpit, 33076, Pessac, France.
Rodrigo González-RomeroChromatin Structure and Evolution (Chromevol) Group, Department of Biological Sciences, Florida International University, North Miami, FL, USA.ORCID 0000-0002-9848-0182
Geoff GudaviciusDepartment of Biochemistry & Microbiology, University of Victoria, Victoria, BC V8W 3P6, Canada.
Jose M Eirin-LopezChromatin Structure and Evolution (Chromevol) Group, Department of Biological Sciences, Florida International University, North Miami, FL, USA.
Till BartkeMRC London Institute of Medical Sciences (LMS), Du Cane Road, London, W12 0NN, UK.
Cameron D MackerethUniv. Bordeaux, Inserm, CNRS, ARNA Laboratory, U1212, UMR 5320, Institut Européen de Chimie et Biologie, 2 rue Robert Escarpit, 33076, Pessac, France.
Juan AusióDepartment of Biochemistry & Microbiology, University of Victoria, Victoria, BC V8W 3P6, Canada.
Christopher J NelsonDepartment of Biochemistry & Microbiology, University of Victoria, Victoria, BC V8W 3P6, Canada. cjn@uvic.ca.
University of Victoria · CACentre National de la Recherche Scientifique · FRFlorida International University · USMRC London Institute of Medical Sciences · GB

Funding

Medical Research Council MC_UP_1102/2
6 · The paper itself

Abstract

The nucleoplasmin family of histone chaperones is identified by a pentamer-forming domain and multiple acidic tracts that mediate histone binding and chaperone activity. Within this family, a novel domain organization was recently discovered that consists of an N-terminal nucleoplasmin-like (NPL) domain and a C-terminal FKBP peptidyl-proline isomerase domain. Saccharomyces cerevisiae Fpr4 is one such protein. Here we report that in addition to its known histone prolyl isomerase activities, the Fpr4 FKBP domain binds to nucleosomes and nucleosome arrays in vitro. This ability is mediated by a collection of basic patches that enable the enzyme to stably associate with linker DNA. The interaction of the Fpr4 FKBP with recombinant chromatin complexes condenses nucleosome arrays independently of its catalytic activity. Based on phylogenetic comparisons we propose that the chromatin binding ability of 'basic' FKBPs is shared amongst related orthologues present in fungi, plants, and insects. Thus, a subclass of FKBP prolyl isomerase enzymes is recruited to linker regions of chromatin.

Indexed as

Histone ChaperonesHumansNucleosomesProtein DomainsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTacrolimus Binding ProteinsFpr4 protein, S cerevisiaeHistone ChaperonesNucleosomesSaccharomyces cerevisiae ProteinsTacrolimus Binding Proteins

Identifiers

PMID28630422
PMCPMC5476585
OpenAlexW2627008401

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.