Evidence map›Paper›PMID 28630043›Full record

ArticleThe Journal of biological chemistry2017

The small GTPases K-Ras, N-Ras, and H-Ras have distinct biochemical properties determined by allosteric effects.

Christian W Johnson, Derion Reid, Jillian A Parker, Shores Salter, Ryan Knihtila, Petr Kuzmic, Carla Mattos

Open access · hybridAbstract readComparative Study
In one paragraph

Article in The Journal of biological chemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 81 papers.

0numbers the graph read from it
0cells of the map it votes in
81citing papers in PubMed
6.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

81 citing papers in PubMed, 133 citations in OpenAlex.

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  10. Acta pharmaceutica Sinica. B · 2025
    Article
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  19. Decrypting Allostery in Membrane-Bound K-Ras4B Using ComplementaryJournal of the American Chemical Society · 2024
    Article
  20. Exploring somatic mutations inFrontiers in pharmacology · 2024
    Article

21 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Christian W JohnsonDepartment of Chemistry and Chemical Biology, Northeastern University, Boston, Massachusetts 02115.
Derion ReidDepartment of Chemistry and Chemical Biology, Northeastern University, Boston, Massachusetts 02115.
Jillian A ParkerDepartment of Chemistry and Chemical Biology, Northeastern University, Boston, Massachusetts 02115.
Shores SalterDepartment of Chemistry and Chemical Biology, Northeastern University, Boston, Massachusetts 02115.
Ryan KnihtilaDepartment of Chemistry and Chemical Biology, Northeastern University, Boston, Massachusetts 02115.
Petr KuzmicBioKin Ltd., Watertown, Massachusetts 02472.
Carla MattosDepartment of Chemistry and Chemical Biology, Northeastern University, Boston, Massachusetts 02115. Electronic address: c.mattos@northeastern.edu.
Northeastern University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

H-Ras, K-Ras, and N-Ras are small GTPases that are important in the control of cell proliferation, differentiation, and survival, and their mutants occur frequently in human cancers. The G-domain, which catalyzes GTP hydrolysis and mediates downstream signaling, is 95% conserved between the Ras isoforms. Because of their very high sequence identity, biochemical studies done on H-Ras have been considered representative of all three Ras proteins. We show here that this is not a valid assumption. Using enzyme kinetic assays under identical conditions, we observed clear differences between the three isoforms in intrinsic catalysis of GTP by Ras in the absence and presence of the Ras-binding domain (RBD) of the c-Raf kinase protein (Raf-RBD). Given their identical active sites, isoform G-domain differences must be allosteric in origin, due to remote isoform-specific residues that affect conformational states. We present the crystal structure of N-Ras bound to a GTP analogue and interpret the kinetic data in terms of structural features specific for H-, K-, and N-Ras.

Indexed as

Models, MolecularAllosteric RegulationAllosteric SiteAmino Acid SubstitutionBiocatalysisCatalytic DomainCrystallography, X-RayDinucleoside PhosphatesEnzyme StabilityGTP PhosphohydrolasesGuanosine TriphosphateHumansIsoenzymesLigandsMembrane ProteinsPeptide Fragmentsdiguanosine pentaphosphateDinucleoside PhosphatesGTP PhosphohydrolasesGuanosine TriphosphateHRAS protein, humanIsoenzymesKRAS protein, humanLigandsMembrane ProteinsNRAS protein, humanPeptide FragmentsProto-Oncogene Proteins c-rafProto-Oncogene Proteins p21(ras)Recombinant Proteinsallosteric regulationconformational changeenzyme catalysisenzyme structureoncogeneRas protein

Identifiers

PMID28630043
PMCPMC5546037
OpenAlexW2717068414

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.