Evidence map›Paper›PMID 28628741›Full record

ArticleChembiochem : a European journal of chemical biology2017

Amplicon Competition Enables End-Point Quantitation of Nucleic Acids Following Isothermal Amplification.

Yu Sherry Jiang, Apollo Stacy, Marvin Whiteley, Andrew D Ellington, Sanchita Bhadra

Abstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
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  6. Current methods for diagnosis of human coronaviruses: pros and cons.Analytical and bioanalytical chemistry · 2021
    Review
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  10. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Yu Sherry JiangDepartment of Molecular Biosciences, College of Natural Sciences, The University of Texas, Austin, TX, 78712, USA.
Apollo StacyDepartment of Molecular Biosciences, College of Natural Sciences, The University of Texas, Austin, TX, 78712, USA.
Marvin WhiteleyDepartment of Molecular Biosciences, College of Natural Sciences, The University of Texas, Austin, TX, 78712, USA.
Andrew D EllingtonDepartment of Molecular Biosciences, College of Natural Sciences, The University of Texas, Austin, TX, 78712, USA.
Sanchita BhadraDepartment of Molecular Biosciences, College of Natural Sciences, The University of Texas, Austin, TX, 78712, USA.ORCID 0000-0002-4956-2405

Funding

Center for Innovation in Point of Care Technologies for the Future of Cancer CareU54EB015403 · NIBIB · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI KLAPPERICH, CATHERINE M. · 2012 to 2016
$8.9M
Identifying disease mechanisms of a periodontal pathogenF31DE024931 · NIDCR · UNIVERSITY OF TEXAS AT AUSTIN · PI STACY, APOLLO · 2014 to 2016
$119k
NIBIB NIH HHS U54 EB015403NIDCR NIH HHS F31 DE024931
6 · The paper itself

Abstract

It is inherently difficult to quantitate nucleic acid analytes with most isothermal amplification assays. We developed loop-mediated isothermal amplification (LAMP) reactions in which competition between defined numbers of "false" and "true" amplicons leads to order of magnitude quantitation by a single endpoint determination. These thresholded LAMP reactions were successfully used to directly and quantitatively estimate the numbers of nucleic acids in complex biospecimens, including directly from cells and in sewage, with the values obtained closely correlating with qPCR quantitations. Thresholded LAMP reactions are amenable to endpoint readout by cell phone, unlike other methods that require continuous monitoring, and should therefore prove extremely useful in developing one-pot reactions for point-of-care diagnostics without needing sophisticated material or informatics infrastructure.

Indexed as

Nucleic Acid Amplification TechniquesAnimalsBacterial ProteinsFusobacterium InfectionsFusobacterium nucleatumMiceNeuropilin-2Nucleic AcidsPoint-of-Care SystemsProto-Oncogene Proteins B-rafRNA, MessengerBacterial ProteinsBraf protein, mouseNeuropilin-2Nucleic AcidsProto-Oncogene Proteins B-rafRNA, Messengercopy numberisothermal amplificationnucleic acidspoint-of-care diagnosticssignal threshold

Identifiers

PMID28628741
PMCPMC5890436

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.