Evidence map›Paper›PMID 28628608›Full record

ArticlePLoS genetics2017

TCP4-dependent induction of CONSTANS transcription requires GIGANTEA in photoperiodic flowering in Arabidopsis.

Akane Kubota, Shogo Ito, Jae Sung Shim, Richard S Johnson, Yong Hun Song, Ghislain Breton, Greg S Goralogia, Michael S Kwon, Dianne Laboy Cintrón, Tomotsugu Koyama and 5 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers.

0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed
22.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

74 citing papers in PubMed, 128 citations in OpenAlex.

  1. Article
  2. Article
  3. Genome-Wide Identification of thePlants (Basel, Switzerland) · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Horticulture research · 2025
    Article
  13. TCP3 is a substrate of the COP1/SPA ubiquitin ligase to regulate anthocyanin accumulation and flowering time inProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  14. Review
  15. Article
  16. Flowering time genes branching out.Journal of experimental botany · 2024
    Review
  17. Article
  18. Review
  19. Article
  20. Article

14 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 3 countries.

Akane KubotaDepartment of Biology, University of Washington, Seattle, Washington, United States of America.
Shogo ItoDepartment of Biology, University of Washington, Seattle, Washington, United States of America.
Jae Sung ShimDepartment of Biology, University of Washington, Seattle, Washington, United States of America.
Richard S JohnsonDepartment of Genome Sciences, University of Washington, Seattle, Washington, United States of America.ORCID http://orcid.org/0000-0002-8150-1338
Yong Hun SongDepartment of Life Sciences, Ajou University, Suwon, Korea.
Ghislain BretonSection of Cell and Developmental Biology, Division of Biological Sciences, University of California at San Diego, La Jolla, California, United States of America.ORCID http://orcid.org/0000-0001-6400-3858
Greg S GoralogiaDepartment of Biology, University of Washington, Seattle, Washington, United States of America.ORCID http://orcid.org/0000-0003-4222-3264
Michael S KwonDepartment of Biology, University of Washington, Seattle, Washington, United States of America.ORCID http://orcid.org/0000-0002-0943-568X
Dianne Laboy CintrónDepartment of Biology, University of Washington, Seattle, Washington, United States of America.
Tomotsugu KoyamaBioorganic Research Center, Suntory Foundation for Life Sciences, Kyoto, Japan.
Masaru Ohme-TakagiGraduate School of Science and Engineering, Saitama University, Saitama, Japan.
Jose L Pruneda-PazSection of Cell and Developmental Biology, Division of Biological Sciences, University of California at San Diego, La Jolla, California, United States of America.
Steve A KayKeck School of Medicine, University of Southern California, Los Angeles, California, United States of America.
Michael J MacCossDepartment of Genome Sciences, University of Washington, Seattle, Washington, United States of America.
Takato ImaizumiDepartment of Biology, University of Washington, Seattle, Washington, United States of America.ORCID http://orcid.org/0000-0001-9396-4412
University of Washington · USUniversity of California San Diego · USAjou University · KRSaitama University · JPSuntory Foundation for Life Sciences · JPUniversity of Southern California · US

Funding

University of Washington Nathan Shock Center of Excellence in the Basic Biology of AgingP30AG013280 · NIA · UNIVERSITY OF WASHINGTON · PI Su-In Lee · 1995 to 2026
$27.1M
TrainingP41GM103533 · NIGMS · UNIVERSITY OF WASHINGTON · PI MACCOSS, MICHAEL · 2012 to 2021
$20.7M
GENETIC ANALYSIS OF CIRCADIAN RHYTHMS IN ARABIDOPSISR01GM056006 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI KAY, STEVE A, PRUNEDA-PAZ, JOSE L · 1996 to 2016
$6.0M
Molecular Mechanisms in the Arabidopsis Circadian ClockR01GM067837 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI KAY, STEVE A · 2003 to 2015
$4.7M
Molecular Mechanisms in the Arabidopsis Circadian ClockR37GM067837 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI STEVE A KAY · 2017 to 2026
$4.4M
Molecular Mechanisms of Seasonal Time MeasurementR01GM079712 · NIGMS · UNIVERSITY OF WASHINGTON · PI IMAIZUMI, TAKATO · 2007 to 2022
$3.5M
Diversity Action Plan: UW GenOM ProjectR25HG007153 · NHGRI · UNIVERSITY OF WASHINGTON · PI EICHLER, EVAN · 2013 to 2020
$2.3M
The Arabidopsis Transcription Factor ORFeome and downstream genomic applicationRC2GM092412 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ECKER, JOSEPH R, KAY, STEVE A · 2009 to 2010
$2.0M
NHGRI NIH HHS R25 HG007153NIA NIH HHS P30 AG013280NIGMS NIH HHS P41 GM103533NIGMS NIH HHS R01 GM056006NIGMS NIH HHS R01 GM067837NIGMS NIH HHS R01 GM079712NIGMS NIH HHS R37 GM067837NIGMS NIH HHS RC2 GM092412
6 · The paper itself

Abstract

Photoperiod is one of the most reliable environmental cues for plants to regulate flowering timing. In Arabidopsis thaliana, CONSTANS (CO) transcription factor plays a central role in regulating photoperiodic flowering. In contrast to posttranslational regulation of CO protein, still little was known about CO transcriptional regulation. Here we show that the CINCINNATA (CIN) clade of class II TEOSINTE BRANCHED 1/ CYCLOIDEA/ PROLIFERATING CELL NUCLEAR ANTIGEN FACTOR (TCP) proteins act as CO activators. Our yeast one-hybrid analysis revealed that class II CIN-TCPs, including TCP4, bind to the CO promoter. TCP4 induces CO expression around dusk by directly associating with the CO promoter in vivo. In addition, TCP4 binds to another flowering regulator, GIGANTEA (GI), in the nucleus, and induces CO expression in a GI-dependent manner. The physical association of TCP4 with the CO promoter was reduced in the gi mutant, suggesting that GI may enhance the DNA-binding ability of TCP4. Our tandem affinity purification coupled with mass spectrometry (TAP-MS) analysis identified all class II CIN-TCPs as the components of the in vivo TCP4 complex, and the gi mutant did not alter the composition of the TCP4 complex. Taken together, our results demonstrate a novel function of CIN-TCPs as photoperiodic flowering regulators, which may contribute to coordinating plant development with flowering regulation.

Indexed as

Transcription, GeneticArabidopsisArabidopsis ProteinsCircadian RhythmDNA-Binding ProteinsFlowersGene Expression Regulation, PlantMutationPhotoperiodPlant DevelopmentPlants, Genetically ModifiedPromoter Regions, GeneticTranscription FactorsArabidopsis ProteinsCONSTANS protein, ArabidopsisDNA-Binding ProteinsGI protein, ArabidopsisTCP4 protein, ArabidopsisTranscription Factors

Identifiers

PMID28628608
PMCPMC5495492
OpenAlexW2714272242

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.