Evidence map›Paper›PMID 28628249›Full record

ArticleMolecular microbiology2017

Defining a temporal order of genetic requirements for development of mycobacterial biofilms.

Yong Yang, Joseph Thomas, Yunlong Li, Catherine Vilchèze, Keith M Derbyshire, William R Jacobs, Anil K Ojha

Open access · bronzeAbstract read
In one paragraph

Article in Molecular microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Expression ofFrontiers in cellular and infection microbiology · 2025
    Article
  8. Review
  9. Lipoarabinomannan modification as a source of phenotypic heterogeneity in host-adaptedProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  10. Gene expression during the development of Mycobacterium smegmatis biofilms on hydroxyapatite surfaces.International microbiology : the official journal of the Spanish Society for Microbiology · 2024
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Cell surface (Amsterdam, Netherlands) · 2021
    Article
  18. Biofilms of the non-tuberculousCell surface (Amsterdam, Netherlands) · 2020
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Yong YangDivision of Genetics, Wadsworth Center, New York State Department of Health, Albany, NY, USA.
Joseph ThomasDepartment of Infectious Diseases and Microbiology, University of Pittsburgh, Pittsburgh, PA, USA.
Yunlong LiDivision of Genetics, Wadsworth Center, New York State Department of Health, Albany, NY, USA.
Catherine VilchèzeDepartment of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, NY, USA.
Keith M DerbyshireDivision of Genetics, Wadsworth Center, New York State Department of Health, Albany, NY, USA.
William R JacobsDepartment of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, NY, USA.
Anil K OjhaDivision of Genetics, Wadsworth Center, New York State Department of Health, Albany, NY, USA.ORCID http://orcid.org/0000-0001-5940-2643
New York State Department of Health · USAlbert Einstein College of Medicine · USUniversity of Pittsburgh · US

Funding

Molecular Genetic Analysis of Mycobacterium TuberculosisR37AI026170 · NIAID · ALBERT EINSTEIN COL OF MED YESHIVA UNIV · PI WILLIAM Robert JACOBS · 2004 to 2026
$7.7M
MOLECULAR GENETIC ANALYSIS OF MYCOBACTERIUM TUBERCULOSISR01AI026170 · NIAID · YESHIVA UNIVERSITY · PI JACOBS, WILLIAM ROBERT · 1989 to 2022
$7.1M
Alternative Ribosomes & Antibiotic Tolerance in MycobacteriaR01AI132422 · NIAID · WADSWORTH CENTER · PI RAJENDRA K AGRAWAL, Anil Kumar Ojha · 2017 to 2026
$3.8M
Enzyme-based lysis of mycobacteriaR21AI107595 · NIAID · WADSWORTH CENTER · PI OJHA, ANIL KUMAR · 2014 to 2015
$390k
Genome Scale Discovery of Mycobacterial Gene Function by Synthetic Genetic ArraysR21AI107258 · NIAID · WADSWORTH CENTER · PI DERBYSHIRE, KEITH M, GRAY, TODD · 2013 to 2014
$352k
NIAID NIH HHS R01 AI026170NIAID NIH HHS R01 AI132422NIAID NIH HHS R21 AI107258NIAID NIH HHS R21 AI107595NIAID NIH HHS R37 AI026170
6 · The paper itself

Abstract

Most mycobacterial species spontaneously form biofilms, inducing unique growth physiologies and reducing drug sensitivity. Biofilm growth progresses through three genetically programmed stages: substratum attachment, intercellular aggregation and architecture maturation. Growth of Mycobacterium smegmatis biofilms requires multiple factors including a chaperonin (GroEL1) and a nucleoid-associated protein (Lsr2), although how their activities are linked remains unclear. Here it is shown that Lsr2 participates in intercellular aggregation, but substratum attachment of Lsr2 mutants is unaffected, thereby genetically distinguishing these developmental stages. Further, a suppressor mutation in a glycopeptidolipid synthesis gene (mps) that results in hyperaggregation of cells and fully restores the form and functions of Δlsr2 mutant biofilms was identified. Suppression by the mps mutation is specific to Δlsr2; it does not rescue the maturation-deficient biofilms of a ΔgroEL1 mutant, thereby differentiating the process of aggregation from maturation. Gene expression analysis supports a stepwise process of maturation, highlighted by temporally separated, transient inductions of iron and nitrogen import genes. Furthermore, GroEL1 activity is required for induction of nitrogen, but not iron, import genes. Together, the findings begin to define molecular checkpoints during development of mycobacterial biofilms.

Indexed as

Antigens, BacterialBacterial ProteinsBiofilmsChaperonin 60Gene Expression Regulation, BacterialMutationMycobacterium smegmatisSpatio-Temporal AnalysisAntigens, BacterialBacterial ProteinsChaperonin 60Lsr2 protein, Mycobacterium smegmatis

Identifiers

PMID28628249
PMCPMC5607029
OpenAlexW2687206994

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.