Evidence map›Paper›PMID 28628133›Full record

ArticleNature microbiology2017

HBV RNA pre-genome encodes specific motifs that mediate interactions with the viral core protein that promote nucleocapsid assembly.

Nikesh Patel, Simon J White, Rebecca F Thompson, Richard Bingham, Eva U Weiß, Daniel P Maskell, Adam Zlotnick, Eric Dykeman, Roman Tuma, Reidun Twarock and 2 more

Abstract read
In one paragraph

Article in Nature microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed.

  1. Review
  2. Article
  3. Hepatitis B Virus Nucleocapsid Assembly.Journal of molecular biology · 2025
    Review
  4. Review
  5. Article
  6. Hepatitis B virus entry, assembly, and egress.Microbiology and molecular biology reviews : MMBR · 2024
    Review
  7. Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Hepatitis B and circadian rhythm of the liver.World journal of gastroenterology · 2022
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors.

Nikesh Patel *Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds, LS2 9JT, UK.
Simon J White *Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds, LS2 9JT, UK.
Rebecca F ThompsonAstbury Centre for Structural Molecular Biology, University of Leeds, Leeds, LS2 9JT, UK.
Richard BinghamDepartments of Biology and Mathematics & York Centre for Complex Systems Analysis, University of York, York, YO10 5DD, UK.
Eva U WeißDepartments of Biology and Mathematics & York Centre for Complex Systems Analysis, University of York, York, YO10 5DD, UK.
Daniel P MaskellAstbury Centre for Structural Molecular Biology, University of Leeds, Leeds, LS2 9JT, UK.
Adam ZlotnickDepartment of Molecular & Cellular Biochemistry, Indiana University, Bloomington, IN 47405, USA.
Eric DykemanDepartments of Biology and Mathematics & York Centre for Complex Systems Analysis, University of York, York, YO10 5DD, UK.
Roman TumaAstbury Centre for Structural Molecular Biology, University of Leeds, Leeds, LS2 9JT, UK.
Reidun TwarockDepartments of Biology and Mathematics & York Centre for Complex Systems Analysis, University of York, York, YO10 5DD, UK.
Neil A RansonAstbury Centre for Structural Molecular Biology, University of Leeds, Leeds, LS2 9JT, UK.
Peter G StockleyAstbury Centre for Structural Molecular Biology, University of Leeds, Leeds, LS2 9JT, UK.

Funding

Multimode Observation of Virus Capsid AssemblyR01AI118933 · NIAID · TRUSTEES OF INDIANA UNIVERSITY · PI Adam Zlotnick · 2016 to 2026
$4.0M
Medical Research Council MR/N021517/1NIAID NIH HHS R01 AI118933Wellcome Trust 089311Wellcome Trust 090932Wellcome Trust 110145Wellcome Trust 110145/Z/15/ZWellcome Trust 110146
6 · The paper itself

Abstract

Formation of the hepatitis B virus nucleocapsid is an essential step in the viral lifecycle, but its assembly is not fully understood. We report the discovery of sequence-specific interactions between the viral pre-genome and the hepatitis B core protein that play roles in defining the nucleocapsid assembly pathway. Using RNA SELEX and bioinformatics, we identified multiple regions in the pre-genomic RNA with high affinity for core protein dimers. These RNAs form stem-loops with a conserved loop motif that trigger sequence-specific assembly of virus-like particles (VLPs) at much higher fidelity and yield than in the absence of RNA. The RNA oligos do not interact with preformed RNA-free VLPs, so their effects must occur during particle assembly. Asymmetric cryo-electron microscopy reconstruction of the T = 4 VLPs assembled in the presence of one of the RNAs reveals a unique internal feature connected to the main core protein shell via lobes of density. Biophysical assays suggest that this is a complex involving several RNA oligos interacting with the C-terminal arginine-rich domains of core protein. These core protein-RNA contacts may play one or more roles in regulating the organization of the pre-genome during nucleocapsid assembly, facilitating subsequent reverse transcription and acting as a nucleation complex for nucleocapsid assembly.

Indexed as

Virus AssemblyBinding SitesComputational BiologyHepatitis B virusNucleocapsidProtein BindingRNA, ViralSELEX Aptamer TechniqueViral Core ProteinsRNA, ViralViral Core Proteins

Identifiers

PMID28628133
PMCPMC5495169

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.