Evidence map›Paper›PMID 28628110›Full record

ArticleNature medicine2017

Colonic organoids derived from human induced pluripotent stem cells for modeling colorectal cancer and drug testing.

Miguel Crespo, Eduardo Vilar, Su-Yi Tsai, Kyle Chang, Sadaf Amin, Tara Srinivasan, Tuo Zhang, Nina H Pipalia, Huanhuan Joyce Chen, Mavee Witherspoon and 6 more

Erratum issuedAbstract read
In one paragraph

Article in Nature medicine, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 243 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
243citing papers in PubMed, 2 pooled it
15.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

243 citing papers in PubMed, 2 syntheses or guidelines pooled it, 376 citations in OpenAlex.

  1. Pooled it
  2. Organoids of liver diseases: From bench to bedside.World journal of gastroenterology · 2019
    Pooled it
  3. Article
  4. Regional organization of nutrient absorption across the small intestine.Nature reviews. Gastroenterology & hepatology · 2026
    Review
  5. Recent advancements and limitations of intestinal organoids for clinical applications.Progress in biomedical engineering (Bristol, England) · 2026
    Review
  6. Article
  7. Article
  8. Article
  9. Organoid technology in cancer research.Molecular biomedicine · 2026
    Review
  10. Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. Review
  16. Review
  17. Review
  18. Review
  19. Organoids for Genotoxicity Assessment.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  20. Article

183 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors at 2 institutions in 1 country.

Miguel CrespoDepartment of Surgery, Weill Cornell Medical College, New York, New York, USA.
Eduardo VilarDepartment of Clinical Cancer Prevention, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Su-Yi TsaiDepartment of Surgery, Weill Cornell Medical College, New York, New York, USA.
Kyle ChangDepartment of Clinical Cancer Prevention, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Sadaf AminDepartment of Surgery, Weill Cornell Medical College, New York, New York, USA.
Tara SrinivasanDepartment of Medicine, Weill Cornell Medical College, New York, New York, USA.
Tuo ZhangGenomic Core, Weill Cornell Medical College, New York, New York, USA.ORCID http://orcid.org/0000-0001-5396-918X
Nina H PipaliaDepartment of Biochemistry, Weill Cornell Medical College, New York, New York, USA.
Huanhuan Joyce ChenMeyer Cancer Center, Weill Cornell Medical College, New York, New York, USA.
Mavee WitherspoonDepartment of Medicine, Weill Cornell Medical College, New York, New York, USA.
Miriam GordilloDepartment of Surgery, Weill Cornell Medical College, New York, New York, USA.
Jenny Zhaoying XiangGenomic Core, Weill Cornell Medical College, New York, New York, USA.
Frederick R MaxfieldDepartment of Biochemistry, Weill Cornell Medical College, New York, New York, USA.ORCID http://orcid.org/0000-0003-4396-8866
Steven LipkinDepartment of Medicine, Weill Cornell Medical College, New York, New York, USA.
Todd EvansDepartment of Surgery, Weill Cornell Medical College, New York, New York, USA.
Shuibing ChenDepartment of Surgery, Weill Cornell Medical College, New York, New York, USA.
Cornell University · USThe University of Texas MD Anderson Cancer Center · US

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Fabien Delerue · 1985 to 2026
$290.8M
R25 SUPPLEMENT IN GENETIC EPIDEMIOLOGY EDUCATIONR25CA057730 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI CHANG, SHINE · 1992 to 2016
$18.6M
Studying the Progression and Regression of Beta Cell Dysfunction in Type 2 DiabetDP2DK098093 · NIDDK · WEILL MEDICAL COLL OF CORNELL UNIV · PI CHEN, SHUIBING · 2012 to 2017
$2.6M
Discovery of T1DM Associated Functional Variants in Human Pancreatic Beta Cell Development and SurvivalDP3DK111907 · NIDDK · WEILL MEDICAL COLL OF CORNELL UNIV · PI CHEN, SHUIBING · 2016 to 2016
$2.0M
Discovering New Targets for Chemoprevention in Familial Adenomatous PolyposisR03CA176788 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI VILAR SANCHEZ, EDUARDO · 2014 to 2015
$160k
NCI NIH HHS P30 CA016672NCI NIH HHS R03 CA176788NCI NIH HHS R25 CA057730NIDDK NIH HHS DP2 DK098093NIDDK NIH HHS DP3 DK111907
6 · The paper itself

Abstract

With the goal of modeling human disease of the large intestine, we sought to develop an effective protocol for deriving colonic organoids (COs) from differentiated human embryonic stem cells (hESCs) or induced pluripotent stem cells (iPSCs). Extensive gene and immunohistochemical profiling confirmed that the derived COs represent colon rather than small intestine, containing stem cells, transit-amplifying cells, and the expected spectrum of differentiated cells, including goblet and endocrine cells. We applied this strategy to iPSCs derived from patients with familial adenomatous polyposis (FAP-iPSCs) harboring germline mutations in the WNT-signaling-pathway-regulator gene encoding APC, and we generated COs that exhibit enhanced WNT activity and increased epithelial cell proliferation, which we used as a platform for drug testing. Two potential compounds, XAV939 and rapamycin, decreased proliferation in FAP-COs, but also affected cell proliferation in wild-type COs, which thus limits their therapeutic application. By contrast, we found that geneticin, a ribosome-binding antibiotic with translational 'read-through' activity, efficiently targeted abnormal WNT activity and restored normal proliferation specifically in APC-mutant FAP-COs. These studies provide an efficient strategy for deriving human COs, which can be used in disease modeling and drug discovery for colorectal disease.

Indexed as

Human Embryonic Stem CellsAdenomaAdenomatous Polyposis ColiAdenomatous Polyposis Coli ProteinAntibiotics, AntineoplasticBlotting, WesternCell DifferentiationCell ProliferationColonColorectal NeoplasmsDrug Screening Assays, AntitumorEnteroendocrine CellsFlow CytometryFluorescent Antibody TechniqueGene Expression ProfilingGentamicinsAdenomatous Polyposis Coli Proteinantibiotic G 418Antibiotics, AntineoplasticAPC protein, humanGentamicinsHeterocyclic Compounds, 3-RingSirolimusXAV939

Identifiers

PMID28628110
PMCPMC6055224
OpenAlexW2684461861

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.