Evidence map›Paper›PMID 28628098›Full record

ArticleNature microbiology2017

Short-chain alkanes fuel mussel and sponge Cycloclasticus symbionts from deep-sea gas and oil seeps.

Maxim Rubin-Blum, Chakkiath Paul Antony, Christian Borowski, Lizbeth Sayavedra, Thomas Pape, Heiko Sahling, Gerhard Bohrmann, Manuel Kleiner, Molly C Redmond, David L Valentine and 1 more

Open access · greenAbstract read
In one paragraph

Article in Nature microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
11.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 92 citations in OpenAlex.

  1. Article
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  3. Proteomic analysis of the sponge Aggregation Factor implicates an ancient toolkit for allorecognition and adhesion in animals.Proceedings of the National Academy of Sciences of the United States of America · 2024
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  6. mSystems · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Maxim Rubin-BlumMax-Planck Institute for Marine Microbiology, Celsiusstrasse 1, 28359 Bremen, Germany.ORCID http://orcid.org/0000-0003-2953-3161
Chakkiath Paul AntonyMax-Planck Institute for Marine Microbiology, Celsiusstrasse 1, 28359 Bremen, Germany.ORCID http://orcid.org/0000-0003-1462-7413
Christian BorowskiMax-Planck Institute for Marine Microbiology, Celsiusstrasse 1, 28359 Bremen, Germany.ORCID http://orcid.org/0000-0001-7921-3022
Lizbeth SayavedraMax-Planck Institute for Marine Microbiology, Celsiusstrasse 1, 28359 Bremen, Germany.ORCID http://orcid.org/0000-0001-5814-9471
Thomas PapeMARUM, Center for Marine Environmental Sciences, University of Bremen, 28359 Bremen, Germany.ORCID http://orcid.org/0000-0002-6872-2144
Heiko SahlingMARUM, Center for Marine Environmental Sciences, University of Bremen, 28359 Bremen, Germany.ORCID http://orcid.org/0000-0002-1022-9816
Gerhard BohrmannMARUM, Center for Marine Environmental Sciences, University of Bremen, 28359 Bremen, Germany.ORCID http://orcid.org/0000-0001-9976-4948
Manuel KleinerDepartment of Geoscience, University of Calgary, 2500 University Drive Northwest, Calgary, Alberta T2N 1N4, Canada.ORCID http://orcid.org/0000-0001-6904-0287
Molly C RedmondDepartment of Biological Sciences, University of North Carolina at Charlotte, 9201 University City Blvd, Charlotte, North Carolina 28223, USA.ORCID http://orcid.org/0000-0003-4227-394X
David L ValentineDepartment of Earth Science, University of California at Santa Barbara, 1006 Webb Hall, Santa Barbara, California 93106, USA.ORCID http://orcid.org/0000-0001-5914-9107
Nicole DubilierMax-Planck Institute for Marine Microbiology, Celsiusstrasse 1, 28359 Bremen, Germany.
Max Planck Institute for Marine Microbiology · DEUniversity of Bremen · DEUniversity of Calgary · CAUniversity of California, Santa Barbara · USUniversity of North Carolina at Charlotte · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cycloclasticus bacteria are ubiquitous in oil-rich regions of the ocean and are known for their ability to degrade polycyclic aromatic hydrocarbons (PAHs). In this study, we describe Cycloclasticus that have established a symbiosis with Bathymodiolus heckerae mussels and poecilosclerid sponges from asphalt-rich, deep-sea oil seeps at Campeche Knolls in the southern Gulf of Mexico. Genomic and transcriptomic analyses revealed that, in contrast to all previously known Cycloclasticus, the symbiotic Cycloclasticus appears to lack the genes needed for PAH degradation. Instead, these symbionts use propane and other short-chain alkanes such as ethane and butane as carbon and energy sources, thus expanding the limited range of substrates known to power chemosynthetic symbioses. Analyses of short-chain alkanes in the environment of the Campeche Knolls symbioses revealed that these are present at high concentrations (in the μM to mM range). Comparative genomic analyses revealed high similarities between the genes used by the symbiotic Cycloclasticus to degrade short-chain alkanes and those of free-living Cycloclasticus that bloomed during the Deepwater Horizon oil spill. Our results indicate that the metabolic versatility of bacteria within the Cycloclasticus clade is higher than previously assumed, and highlight the expanded role of these keystone species in the degradation of marine hydrocarbons.

Indexed as

SymbiosisAlkanesAnimalsBivalviaCarbonEnergy MetabolismGene Expression ProfilingGenomicsGulf of AmericaPiscirickettsiaceaePoriferaAlkanesCarbon

Identifiers

PMID28628098
PMCPMC5490736
OpenAlexW2700041388

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.