Evidence map›Paper›PMID 28626066›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2017

Cytoplasmic Form of Carlr lncRNA Facilitates Inflammatory Gene Expression upon NF-κB Activation.

Ainara Castellanos-Rubio, Radomir Kratchmarov, Maialen Sebastian, Koldo Garcia-Etxebarria, Liher Garcia, Iñaki Irastorza, Sankar Ghosh

Open access · bronzeAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 47 citations in OpenAlex.

  1. The long noncoding RNAFrontiers in immunology · 2026
    Article
  2. Review
  3. Non-coding RNA Networks in Infection.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Review
  9. Review
  10. Article
  11. Review
  12. Article
  13. Review
  14. Macrophages in immunoregulation and therapeutics.Signal transduction and targeted therapy · 2023
    Review
  15. Review
  16. Review
  17. Single-cell RNA sequencing uncovers the nuclear decoy lincRNA PIRAT as a regulator of systemic monocyte immunity during COVID-19.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  18. Celiac disease: From genetics to epigenetics.World journal of gastroenterology · 2022
    Review
  19. Tumor immune microenvironment lncRNAs.Briefings in bioinformatics · 2022
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Ainara Castellanos-RubioDepartment of Microbiology and Immunology, College of Physicians and Surgeons, Columbia University, New York, NY 10032; ainara.castellanos@ehu.eus sg2715@columbia.edu.
Radomir KratchmarovDepartment of Microbiology and Immunology, College of Physicians and Surgeons, Columbia University, New York, NY 10032.
Maialen SebastianImmunogenetics Research Laboratory, Department of Genetics, Physical Anthropology and Animal Physiology, University of the Basque Country, UPV/EHU, 48940 Leioa, Spain.
Koldo Garcia-EtxebarriaImmunogenetics Research Laboratory, Department of Genetics, Physical Anthropology and Animal Physiology, University of the Basque Country, UPV/EHU, 48940 Leioa, Spain.
Liher GarciaImmunogenetics Research Laboratory, Department of Genetics, Physical Anthropology and Animal Physiology, University of the Basque Country, UPV/EHU, 48940 Leioa, Spain.
Iñaki IrastorzaPediatric Gastroenterology Unit, Cruces University Hospital, University of the Basque Country, UPV/EHU, 48903 Barakaldo 48903, Spain.
Sankar GhoshDepartment of Microbiology and Immunology, College of Physicians and Surgeons, Columbia University, New York, NY 10032; ainara.castellanos@ehu.eus sg2715@columbia.edu.
University of the Basque Country · ESBioCruces Health research Institute · ESColumbia University · US

Funding

Understanding the Role of a Long Noncoding RNA in Celiac DiseaseR01DK102180 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GHOSH, SANKAR · 2014 to 2018
$1.8M
NIDDK NIH HHS R01 DK102180
6 · The paper itself

Abstract

Long noncoding RNAs (lncRNAs) have emerged as critical regulators of inflammation. To further understand the interaction between inflammatory signaling pathways and lncRNAs, we characterized the function of cardiac and apoptosis-related lncRNA (Carlr), an lncRNA expressed in both mouse and human cells of diverse tissues. Carlr expression is increased following NF-κB signaling in macrophages, with concomitant translocation to, and enrichment of, the transcript in the cytoplasm. Knockdown of Carlr results in impaired expression of NF-κB pathway genes and influences the interaction between macrophages and intestinal cells in an inflammatory environment. In human celiac disease patient samples, increased levels of the Carlr transcript were detected in the cytoplasm, alongside elevated expression of NF-κB pathway genes. These findings suggest that increased Carlr expression and/or cytoplasmic localization is required for efficient NF-κB signaling and is associated with the inflamed tissue state observed in human celiac disease.

Indexed as

Gene Expression RegulationAnimalsApoptosisCeliac DiseaseCytoplasmGene ExpressionHumansInflammationIntestinal MucosaMacrophagesMiceNF-kappa BPhosphorylationRNA, Long NoncodingSignal TransductionNF-kappa BRNA, Long Noncoding

Identifiers

PMID28626066
PMCPMC5531076
OpenAlexW2626785289

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.