Evidence map›Paper›PMID 28625157›Full record

ArticleBioTechniques2017

Purification of single-stranded DNA by co-polymerization with acrylamide and electrophoresis.

Tulsi Ram Damase, Andrew D Ellington, Peter B Allen

Open access · goldAbstract read
In one paragraph

Article in BioTechniques, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Mini review: Enzyme-based DNA synthesis and selective retrieval for data storage.Computational and structural biotechnology journal · 2021
    Review
  6. Review
  7. Review
  8. Article
  9. Inside the Black Box: What Makes SELEX Better?Molecules (Basel, Switzerland) · 2019
    Review
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Tulsi Ram DamaseUniversity of Idaho, Department of Chemistry, Moscow, ID.
Andrew D EllingtonUniversity of Texas at Austin, Department of Chemistry and Biochemistry, Institute for Cellular and Molecular Biology, Austin, TX.
Peter B AllenUniversity of Idaho, Department of Chemistry, Moscow, ID.
University of Idaho · USThe University of Texas at Austin · US

Funding

Sequence-structure-function relationships in human visual photopigmentsP20GM104420 · NIGMS · UNIVERSITY OF IDAHO · PI WICHMAN, HOLLY A · 2015 to 2024
$22.9M
Amorphous computation with transcription logic gatesR01GM094933 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI ELLINGTON, ANDREW D · 2010 to 2013
$1.2M
NIGMS NIH HHS P20 GM104420NIGMS NIH HHS R01 GM094933
6 · The paper itself

Abstract

Single-stranded DNA (ssDNA) oligonucleotides are useful as aptamers, hybridization probes and for emerging applications in DNA nanotechnology. Current methods to purify ssDNA require both a strand-separation step and a separate size-separation step but may still leave double-stranded DNA (dsDNA) impurities in the sample. Here, we use commercially available acrydite DNA primers to immobilize one strand of a PCR product within a polyacrylamide matrix. Electrophoresis moves the non-crosslinked DNA into the gel where the single-stranded product of desired size can be recovered. Our results show this method produces high yields of pure ssDNA.

Indexed as

AcrylamideAptamers, NucleotideDNA PrimersDNA, Single-StrandedElectrophoresis, Polyacrylamide GelEquipment DesignImmobilized Nucleic AcidsPolymerizationAcrylamideAptamers, NucleotideDNA PrimersDNA, Single-StrandedImmobilized Nucleic Acidsaptamer purificationDNAsingle-strand generation

Identifiers

PMID28625157
PMCPMC6800053
OpenAlexW2636378802

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.