Evidence map›Paper›PMID 28623273›Full record

ArticleScientific reports2017

Arabidopsis Transporter ABCG37/PDR9 contributes primarily highly oxygenated Coumarins to Root Exudation.

Jörg Ziegler, Stephan Schmidt, Nadine Strehmel, Dierk Scheel, Steffen Abel

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
4.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 86 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Jörg ZieglerDepartment of Molecular Signal Processing, Leibniz Institute of Plant Biochemistry, D-06120, Halle (Saale), Germany. joerg.ziegler@ipb-halle.de.
Stephan SchmidtDepartment of Stress and Developmental Biology, Leibniz Institute of Plant Biochemistry, D-06120, Halle (Saale), Germany.
Nadine StrehmelDepartment of Stress and Developmental Biology, Leibniz Institute of Plant Biochemistry, D-06120, Halle (Saale), Germany.
Dierk ScheelDepartment of Stress and Developmental Biology, Leibniz Institute of Plant Biochemistry, D-06120, Halle (Saale), Germany.
Steffen AbelDepartment of Molecular Signal Processing, Leibniz Institute of Plant Biochemistry, D-06120, Halle (Saale), Germany.
Leibniz Institute of Plant Biochemistry · DEUniversity of California, Davis · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The chemical composition of root exudates strongly impacts the interactions of plants with microorganisms in the rhizosphere and the efficiency of nutrient acquisition. Exudation of metabolites is in part mediated by ATP-binding cassette (ABC) transporters. In order to assess the contribution of individual ABC transporters to root exudation, we performed an LC-MS based non-targeted metabolite profiling of semi-polar metabolites accumulating in root exudates of Arabidopsis thaliana plants and mutants deficient in the expression of ABCG36 (PDR8/PEN3), ABCG37 (PDR9) or both transporters. Comparison of the metabolite profiles indicated distinct roles for each ABC transporter in root exudation. Thymidine exudation could be attributed to ABCG36 function, whereas coumarin exudation was strongly reduced only in ABCG37 deficient plants. However, coumarin exudation was compromised in abcg37 mutants only with respect to certain metabolites of this substance class. The specificity of ABCG37 for individual coumarins was further verified by a targeted LC-MS based coumarin profiling method. The response to iron deficiency, which is known to strongly induce coumarin exudation, was also investigated. In either treatment, the distribution of individual coumarins between roots and exudates in the investigated genotypes suggested the involvement of ABCG37 in the exudation specifically of highly oxygenated rather than monohydroxylated coumarins.

Indexed as

Arabidopsis ProteinsATP Binding Cassette Transporter, Subfamily GCoumarinsMetabolomeMetabolomicsOxygenPlant ExudatesPlant RootsArabidopsis ProteinsATP Binding Cassette Transporter, Subfamily GCoumarinsOxygenPDR9 protein, ArabidopsisPlant Exudates

Identifiers

PMID28623273
PMCPMC5473935
OpenAlexW2626773522

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.