Evidence map›Paper›PMID 28622368›Full record

ArticlePLoS neglected tropical diseases2017

Minimal genetic change in Vibrio cholerae in Mozambique over time: Multilocus variable number tandem repeat analysis and whole genome sequencing.

Marcelino Garrine, Inácio Mandomando, Delfino Vubil, Tacilta Nhampossa, Sozinho Acacio, Shan Li, Joseph N Paulson, Mathieu Almeida, Daryl Domman, Nicholas R Thomson and 2 more

Abstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Contrasting Epidemiology of Cholera in Bangladesh and Africa.The Journal of infectious diseases · 2021
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
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  11. Mitigating Cholera in the Aftermath of Cyclone Idai.The American journal of tropical medicine and hygiene · 2019
    Article
  12. Article
  13. Article
  14. Surveillance and Genomics of ToxigenicFrontiers in microbiology · 2019
    Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Marcelino GarrineCentro de Investigação em Saúde de Manhiça (CISM), Maputo, Mozambique.
Inácio MandomandoCentro de Investigação em Saúde de Manhiça (CISM), Maputo, Mozambique.
Delfino VubilCentro de Investigação em Saúde de Manhiça (CISM), Maputo, Mozambique.
Tacilta NhampossaCentro de Investigação em Saúde de Manhiça (CISM), Maputo, Mozambique.
Sozinho AcacioCentro de Investigação em Saúde de Manhiça (CISM), Maputo, Mozambique.
Shan LiDepartment of Epidemiology and Public Health, University of Maryland Baltimore, Baltimore, Maryland, United States of America.
Joseph N PaulsonInstitute for Applied Computer Sciences, University of Maryland, College Park, Maryland, United States of America.
Mathieu AlmeidaInstitute for Applied Computer Sciences, University of Maryland, College Park, Maryland, United States of America.
Daryl DommanInfection Genomics, Wellcome Trust Sanger Instititue, Hinxton, England, United Kingdom.
Nicholas R ThomsonInfection Genomics, Wellcome Trust Sanger Instititue, Hinxton, England, United Kingdom.
Pedro AlonsoCentro de Investigação em Saúde de Manhiça (CISM), Maputo, Mozambique.
Oscar Colin StineDepartment of Epidemiology and Public Health, University of Maryland Baltimore, Baltimore, Maryland, United States of America.ORCID http://orcid.org/0000-0003-3974-3752

Funding

EPIDEMIOLOGY &ECOLOGY OF VIBRIO CHOLERAE IN BANGLADESHR01AI039129 · NIAID · JOHNS HOPKINS UNIVERSITY · PI SACK, DAVID A · 1996 to 2014
$15.2M
Epidemiology and Ecology of Cholera in AfricaR01AI123422 · NIAID · JOHNS HOPKINS UNIVERSITY · PI Amanda Kay Debes, DAVID A SACK · 2017 to 2026
$6.6M
NIAID NIH HHS R01 AI039129NIAID NIH HHS R01 AI123422Wellcome Trust 098051
6 · The paper itself

Abstract

Although cholera is a major public health concern in Mozambique, its transmission patterns remain unknown. We surveyed the genetic relatedness of 75 Vibrio cholerae isolates from patients at Manhiça District Hospital between 2002-2012 and 3 isolates from river using multilocus variable-number tandem-repeat analysis (MLVA) and whole genome sequencing (WGS). MLVA revealed 22 genotypes in two clonal complexes and four unrelated genotypes. WGS revealed i) the presence of recombination, ii) 67 isolates descended monophyletically from a single source connected to Wave 3 of the Seventh Pandemic, and iii) four clinical isolates lacking the cholera toxin gene. This Wave 3 strain persisted for at least eight years in either an environmental reservoir or circulating within the human population. Our data raises important questions related to where these isolates persist and how identical isolates can be collected years apart despite our understanding of high change rate of MLVA loci and the V. cholerae molecular clock.

Indexed as

Genetic VariationGenotyping TechniquesBacterial Typing TechniquesCholeraCluster AnalysisGenotypeHumansMinisatellite RepeatsMozambiquePhylogenySequence Analysis, DNAVibrio cholerae

Identifiers

PMID28622368
PMCPMC5489214

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.