Evidence map›Paper›PMID 28618368›Full record

ReviewCurrent opinion in microbiology2017

The scales of the zebrafish: host-microbiota interactions from proteins to populations.

Adam R Burns, Karen Guillemin

Abstract readReview
In one paragraph

Review in Current opinion in microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Identification and Characterization of Zebrafish Tlr4 Coreceptor Md-2.Journal of immunology (Baltimore, Md. : 1950) · 2021
    Article
  12. Review
  13. Microbiome-mediated plasticity directs host evolution along several distinct time scales.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2020
    Article
  14. Review
  15. Review
  16. Experimental and computational approaches to unravel microbial community assembly.Computational and structural biotechnology journal · 2020
    Review
  17. Review
  18. Review
  19. Scales of persistence: transmission and the microbiome.Current opinion in microbiology · 2019
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Adam R BurnsInstitute of Ecology and Evolution, University of Oregon, Eugene, OR 97403, United States.
Karen GuilleminInstitute of Molecular Biology, University of Oregon, Eugene, OR 97403, United States; Humans and the Microbiome Program, Canadian Institute for Advanced Research, Toronto, Ontario M5G 1Z8, Canada. Electronic address: kguillem@uoregon.edu.

Funding

Research Area IIIP50GM098911 · NIGMS · UNIVERSITY OF OREGON · PI PARTHASARATHY, RAGHUVEER · 2012 to 2016
$9.8M
A Zebrafish Model to Study the Role of the Microbiota in the Etiology of IntestinR01CA176579 · NCI · UNIVERSITY OF OREGON · PI GUILLEMIN, KAREN J · 2014 to 2018
$1.5M
NCI NIH HHS R01 CA176579NIGMS NIH HHS P50 GM098911
6 · The paper itself

Abstract

The interactions between animal hosts and their associated microbiota can be studied at multiple spatial and conceptual scales, with each providing unique perspectives on the processes structuring host-microbe systems. Recently, zebrafish, Danio rerio, has emerged as a powerful model in which to study these interactions at many different scales. Controlled but simplified gnotobiotic experiments enable discovery of the molecules and cellular dynamics that shape host-microbe system development, whereas population level investigations of bacterial dispersal and transmission are beginning to reveal the processes shaping microbiota assembly across hosts. Here we review recent examples of these studies and discuss how the results can be integrated to better understand host-microbiota systems.

Indexed as

MicrobiotaAnimalsAnimal ScalesEcosystemProteinsZebrafishProteins

Identifiers

PMID28618368
PMCPMC5705389

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.