ArticlePloS one2017
Complete chloroplast genome sequence of common bermudagrass (Cynodon dactylon (L.) Pers.) and comparative analysis within the family Poaceae.
Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 21 papers.
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Who cites it
21 citing papers in PubMed, 39 citations in OpenAlex.
- Unraveling Phylogenetic Relationships Among SixGenes · 2025Article
- Chloroplast genomic diversity in eleven Pennisetum species.Frontiers in genetics · 2025Article
- The complete chloroplast genome ofMitochondrial DNA. Part B, Resources · 2025Article
- Research Progress and Prospects of Molecular Breeding in Bermudagrass (International journal of molecular sciences · 2024Review
- Article
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- Poaceae Chloroplast Genome Sequencing: Great Leap Forward in Recent Ten Years.Current genomics · 2023Review
- Phylogeny and adaptive evolution of subgenus Rhizirideum (Amaryllidaceae, Allium) based on plastid genomes.BMC plant biology · 2023Article
- Article
- The Plastome Sequences ofInternational journal of molecular sciences · 2022Article
- Comparative and Phylogenetic Analysis Based on the Chloroplast Genome ofFrontiers in plant science · 2022Article
- The complete chloroplast genome ofMitochondrial DNA. Part B, Resources · 2022Article
- The Chloroplast Phylogenomics and Systematics ofPlants (Basel, Switzerland) · 2021Article
- Variation in Plastome Sizes Accompanied by Evolutionary History in Monogenomic Triticeae (Poaceae: Triticeae).Frontiers in plant science · 2021Article
- Comparative Plastomes and Phylogenetic Analysis ofFrontiers in plant science · 2021Article
- Comparative Analysis of the Complete Plastid Genome of FivePlants (Basel, Switzerland) · 2020Article
- Comparison of the CompletePlants (Basel, Switzerland) · 2019Article
- Towards Improved Molecular Identification Tools in Fine Fescue (Frontiers in genetics · 2019Article
- Development of molecular markers for invasive alien plants in Korea: a case study of a toxic weed,PeerJ · 2019Article
- The Complete Chloroplast Genome Sequence of Tree of Heaven (Ailanthus altissima (Mill.) (Sapindales: Simaroubaceae), an Important Pantropical Tree.International journal of molecular sciences · 2018Article
Corrections and comments
- Erratum issued
Authors and funding
4 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Common bermudagrass (Cynodon dactylon (L.) Pers.) belongs to the subfamily Chloridoideae of the Poaceae family, one of the most important plant families ecologically and economically. This grass has a long connection with human culture but its systematics is relatively understudied. In this study, we sequenced and investigated the chloroplast genome of common bermudagrass, which is 134,297 bp in length with two single copy regions (LSC: 79,732 bp; SSC: 12,521 bp) and a pair of inverted repeat (IR) regions (21,022 bp). The annotation contains a total of 128 predicted genes, including 82 protein-coding, 38 tRNA, and 8 rRNA genes. Additionally, our in silico analyses identified 10 sets of repeats longer than 20 bp and predicted the presence of 36 RNA editing sites. Overall, the chloroplast genome of common bermudagrass resembles those from other Poaceae lineages. Compared to most angiosperms, the accD gene and the introns of both clpP and rpoC1 genes are missing. Additionally, the ycf1, ycf2, ycf15, and ycf68 genes are pseudogenized and two genome rearrangements exist. Our phylogenetic analysis based on 47 chloroplast protein-coding genes supported the placement of common bermudagrass within Chloridoideae. Our phylogenetic character mapping based on the parsimony principle further indicated that the loss of the accD gene and clpP introns, the pseudogenization of four ycf genes, and the two rearrangements occurred only once after the most recent common ancestor of the Poaceae diverged from other monocots, which could explain the unusual long branch leading to the Poaceae when phylogeny is inferred based on chloroplast sequences.
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