Evidence map›Paper›PMID 28617800›Full record

ArticlePLoS neglected tropical diseases2017

Whole genome sequencing distinguishes between relapse and reinfection in recurrent leprosy cases.

Mariane M A Stefani, Charlotte Avanzi, Samira Bührer-Sékula, Andrej Benjak, Chloé Loiseau, Pushpendra Singh, Maria A A Pontes, Heitor S Gonçalves, Emerith M Hungria, Philippe Busso and 13 more

Open access · goldAbstract readEvaluation Study
In one paragraph

Article in PLoS neglected tropical diseases, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed, 1 pooled it
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 1 synthesis or guideline pooled it, 54 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Leprosy.Nature reviews. Disease primers · 2024
    Review
  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Rapid Diagnosis ofFrontiers in medicine · 2022
    Article
  11. Article
  12. Treatment and Evaluation Advances in Leprosy Neuropathy.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2021
    Review
  13. Article
  14. Observational
  15. Article
  16. Observational
  17. Evolutionary history ofPhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2020
    Article
  18. Multi-omic detection ofPhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2020
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 10 institutions in 4 countries.

Mariane M A StefaniTropical Pathology and Public Health Institute, Federal University of Goiás, Goiania, Goiás, Brazil.ORCID http://orcid.org/0000-0002-3731-0817
Charlotte AvanziGlobal Health Institute, École Polytechnique Fédérale de Lausanne, Switzerland.
Samira Bührer-SékulaTropical Pathology and Public Health Institute, Federal University of Goiás, Goiania, Goiás, Brazil.
Andrej BenjakGlobal Health Institute, École Polytechnique Fédérale de Lausanne, Switzerland.
Chloé LoiseauGlobal Health Institute, École Polytechnique Fédérale de Lausanne, Switzerland.
Pushpendra SinghGlobal Health Institute, École Polytechnique Fédérale de Lausanne, Switzerland.
Maria A A PontesDona Libânia Dermatology Centre, Fortaleza, Ceará, Brazil.
Heitor S GonçalvesDona Libânia Dermatology Centre, Fortaleza, Ceará, Brazil.
Emerith M HungriaTropical Pathology and Public Health Institute, Federal University of Goiás, Goiania, Goiás, Brazil.
Philippe BussoGlobal Health Institute, École Polytechnique Fédérale de Lausanne, Switzerland.
Jérémie PitonGlobal Health Institute, École Polytechnique Fédérale de Lausanne, Switzerland.
Maria I S SilveiraDona Libânia Dermatology Centre, Fortaleza, Ceará, Brazil.
Rossilene CruzUniversity of Amazonas State, Manaus, Amazonas, Brazil.
Antônio SchetinniTropical Dermatology and Venerology, Alfredo da Matta Foundation, Manaus, Amazonas, Brazil.
Maurício B CostaFaculty of Medicine, Federal University of Goiás, Goiania, Goiás, Brazil.
Marcos C L VirmondLauro Souza Lima Institute, Bauru, São Paulo, Brazil.
Suzana M DiorioLauro Souza Lima Institute, Bauru, São Paulo, Brazil.
Ida M F Dias-BaptistaLauro Souza Lima Institute, Bauru, São Paulo, Brazil.
Patricia S RosaLauro Souza Lima Institute, Bauru, São Paulo, Brazil.
Masanori MatsuokaDepartment of Mycobacteriology, Leprosy Research Center, National Institute of Infectious Diseases, Higashimurayama, Tokyo, Japan.
Maria L F PennaEpidemiology and Biostatistics Department, Universidade Federal Fluminense, Rio de Janeiro, Brazil.
Stewart T ColeGlobal Health Institute, École Polytechnique Fédérale de Lausanne, Switzerland.
Gerson O PennaTropical Medicine Centre, University of Brasília, Brasília DF, Brazil.
École Polytechnique Fédérale de Lausanne · CHInstituto Lauro de Souza Lima · BRFundação de Medicina Tropical · BRInstituto de Dermatologia Dona Libania · BRUniversidade Federal de Goiás · BRMaharaja Sayajirao University of Baroda · INNational Institute of Infectious Diseases · JPSwiss Tropical and Public Health Institute · CHUniversidade de Brasília · BRUniversidade Federal Fluminense · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSince leprosy is both treated and controlled by multidrug therapy (MDT) it is important to monitor recurrent cases for drug resistance and to distinguish between relapse and reinfection as a means of assessing therapeutic efficacy. All three objectives can be reached with single nucleotide resolution using next generation sequencing and bioinformatics analysis of Mycobacterium leprae DNA present in human skin. METHODOLOGY: DNA was isolated by means of optimized extraction and enrichment methods from samples from three recurrent cases in leprosy patients participating in an open-label, randomized, controlled clinical trial of uniform MDT in Brazil (U-MDT/CT-BR). Genome-wide sequencing of M. leprae was performed and the resultant sequence assemblies analyzed in silico. PRINCIPAL

findingsIn all three cases, no mutations responsible for resistance to rifampicin, dapsone and ofloxacin were found, thus eliminating drug resistance as a possible cause of disease recurrence. However, sequence differences were detected between the strains from the first and second disease episodes in all three patients. In one case, clear evidence was obtained for reinfection with an unrelated strain whereas in the other two cases, relapse appeared more probable. CONCLUSIONS/SIGNIFICANCE: This is the first report of using M. leprae whole genome sequencing to reveal that treated and cured leprosy patients who remain in endemic areas can be reinfected by another strain. Next generation sequencing can be applied reliably to M. leprae DNA extracted from biopsies to discriminate between cases of relapse and reinfection, thereby providing a powerful tool for evaluating different outcomes of therapeutic regimens and for following disease transmission.

Indexed as

Genome, BacterialAdolescentAdultBrazilComputational BiologyDNA, BacterialHigh-Throughput Nucleotide SequencingHumansLeprosyMaleMolecular TypingMycobacterium lepraeRandomized Controlled Trials as TopicRecurrenceSequence Analysis, DNAYoung AdultDNA, Bacterial

Identifiers

PMID28617800
PMCPMC5498066
OpenAlexW2626463343

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.