Evidence map›Paper›PMID 28617588›Full record

ArticleBiochemistry2017

Biosynthesis of Single Thioether c-Type Cytochromes Provides Insight into Mechanisms Intrinsic to Holocytochrome c Synthase (HCCS).

Shalon E Babbitt, Jennifer Hsu, Deanna L Mendez, Robert G Kranz

Abstract read
In one paragraph

Article in Biochemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Shalon E BabbittDepartment of Biology, Washington University , St. Louis, Missouri 63130, United States.ORCID 0000-0001-7538-107X
Jennifer HsuDepartment of Biology, Washington University , St. Louis, Missouri 63130, United States.
Deanna L MendezDepartment of Biology, Washington University , St. Louis, Missouri 63130, United States.ORCID 0000-0002-0481-4816
Robert G KranzDepartment of Biology, Washington University , St. Louis, Missouri 63130, United States.

Funding

MOLECULAR GENETIC ANALYSES OF CYTOCHROMES C BIOGENESISR01GM047909 · NIGMS · WASHINGTON UNIVERSITY · PI KRANZ, ROBERT G. · 1994 to 2019
$6.0M
PROBING THE ACTIVE SITE OF THE MITOCHONDRIAL HOLOCYTOCHROME C SYNTHASE, HCCSF32GM108278 · NIGMS · WASHINGTON UNIVERSITY · PI LEDBETTER, SHALON ELIZABETH · 2014 to 2016
$135k
NIGMS NIH HHS F32 GM108278NIGMS NIH HHS R01 GM047909
6 · The paper itself

Abstract

C-type cytochromes (cyts c) are generally characterized by the presence of two thioether attachments between heme and two cysteine residues within a highly conserved CXXCH motif. Most eukaryotes use the System III cyt c biogenesis pathway composed of holocytochrome c synthase (HCCS) to catalyze thioether formation. Some protozoan organisms express a functionally equivalent, natural variant of cyt c with an XXXCH heme-attachment motif, resulting in a single covalent attachment. Previous studies have shown that recombinant HCCS can produce low levels of the XXXCH single thioether variant. However, cyt c variants containing substitutions at the C-terminal cysteine of the heme-attachment site (i.e., resulting in CXXXH) have never been observed in nature, and attempts to biosynthesize a recombinant version of this cyt c variant have been largely unsuccessful. In this study, we report the biochemical analyses of an HCCS-matured CXXXH cyt c variant, comparing its biosynthesis and properties to those of the XXXCH variant. The results indicate that although HCCS mediates heme attachment to the N-terminal cysteine in CXXXH cyt c variants, up to 50% of the cyt c produced is modified in an oxygen-dependent manner, resulting in a mixed population of cyt c. Since this aerobic modification occurs only in the context of CXXXH, we also propose that natural HCCS-mediated heme attachment to CXXCH likely initiates at the C-terminal cysteine.

Indexed as

Models, MolecularProtein EngineeringAmino Acid MotifsAmino Acid SequenceAmino Acid SubstitutionCircular DichroismConserved SequenceCysteineCytochromes cGlutathione TransferaseHemeHumansLyasesMutagenesis, Site-DirectedMutationOxygenCysteinecytochrome C synthetaseCytochromes cGlutathione TransferaseHemeLyasesOxygenRecombinant Fusion Proteins

Identifiers

PMID28617588
PMCPMC5551481

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.