Evidence map›Paper›PMID 28616951›Full record

ArticleNanoscale2017

Direct characterization of the native structure and mechanics of cyanobacterial carboxysomes.

Matthew Faulkner, Jorge Rodriguez-Ramos, Gregory F Dykes, Siân V Owen, Selene Casella, Deborah M Simpson, Robert J Beynon, Lu-Ning Liu

Open access · hybridAbstract read
In one paragraph

Article in Nanoscale, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 96 citations in OpenAlex.

  1. Protocol for AFM Nanoindentation of Viruses and Protein Cages.Methods in molecular biology (Clifton, N.J.) · 2027
    Article
  2. Article
  3. Functional and structural insights into cyanobacterial COThe Plant journal : for cell and molecular biology · 2026
    Review
  4. Architectural and biochemical advances in understanding microbial COThe Plant journal : for cell and molecular biology · 2026
    Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Engineering COPlant communications · 2025
    Article
  10. Article
  11. Article
  12. IntegrativemSystems · 2024
    Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Matthew FaulknerInstitute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK. luning.liu@liverpool.ac.uk.ORCID http://orcid.org/0000-0002-0578-388X
Jorge Rodriguez-RamosInstitute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK. luning.liu@liverpool.ac.uk.ORCID http://orcid.org/0000-0001-9837-6257
Gregory F DykesInstitute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK. luning.liu@liverpool.ac.uk.ORCID http://orcid.org/0000-0002-0626-9487
Siân V OwenInstitute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK. luning.liu@liverpool.ac.uk.ORCID http://orcid.org/0000-0001-5330-3177
Selene CasellaInstitute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK. luning.liu@liverpool.ac.uk.ORCID http://orcid.org/0000-0002-8564-3771
Deborah M SimpsonInstitute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK. luning.liu@liverpool.ac.uk.ORCID http://orcid.org/0000-0002-3962-4895
Robert J BeynonInstitute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK. luning.liu@liverpool.ac.uk.ORCID http://orcid.org/0000-0003-0857-495X
Lu-Ning LiuInstitute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK. luning.liu@liverpool.ac.uk.ORCID http://orcid.org/0000-0002-8884-4819
University of Liverpool · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Carboxysomes are proteinaceous organelles that play essential roles in enhancing carbon fixation in cyanobacteria and some proteobacteria. These self-assembling organelles encapsulate Ribulose 1,5-bisphosphate carboxylase/oxygenase (Rubisco) and carbonic anhydrase using a protein shell structurally resembling an icosahedral viral capsid. The protein shell serves as a physical barrier to protect enzymes from the cytosol and a selectively permeable membrane to mediate transport of enzyme substrates and products. The structural and mechanical nature of native carboxysomes remain unclear. Here, we isolate functional β-carboxysomes from the cyanobacterium Synechococcus elongatus PCC7942 and perform the first characterization of the macromolecular architecture and inherent physical mechanics of single β-carboxysomes using electron microscopy, atomic force microscopy (AFM) and proteomics. Our results illustrate that the intact β-carboxysome comprises three structural domains, a single-layered icosahedral shell, an inner layer and paracrystalline arrays of interior Rubisco. We also observe the protein organization of the shell and partial β-carboxysomes that likely serve as the β-carboxysome assembly intermediates. Furthermore, the topography and intrinsic mechanics of functional β-carboxysomes are determined in native conditions using AFM and AFM-based nanoindentation, revealing the flexible organization and soft mechanical properties of β-carboxysomes compared to rigid viruses. Our study provides new insights into the natural characteristics of β-carboxysome organization and nanomechanics, which can be extended to diverse bacterial microcompartments and are important considerations for the design and engineering of functional carboxysomes in other organisms to supercharge photosynthesis. It offers an approach for inspecting the structural and mechanical features of synthetic metabolic organelles and protein scaffolds in bioengineering.

Indexed as

Carbon CycleBacterial ProteinsCarbonic AnhydrasesOrganellesPhotosynthesisRibulose-Bisphosphate CarboxylaseSynechococcusBacterial ProteinsCarbonic AnhydrasesRibulose-Bisphosphate Carboxylase

Identifiers

PMID28616951
PMCPMC5708340
OpenAlexW2624103444

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.