ArticleBiotechnology for biofuels2017
Proximity ligation scaffolding and comparison of two
Article in Biotechnology for biofuels, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 21 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
21 citing papers in PubMed.
- TrichoBase: a standardized genomic resource for comparative genomics of Trichoderma species.BMC genomic data · 2026Article
- GTDB release 10: a complete and systematic taxonomy for 715 230 bacterial and 17 245 archaeal genomes.Nucleic acids research · 2026Article
- Transgressive phenotypes from outbreeding between theMicrobiology spectrum · 2024Article
- Enhanced heterologous gene expression in Trichoderma reesei by promoting multicopy integration.Applied microbiology and biotechnology · 2024Article
- Assessment of the feed additive consisting of endo-1,4-β-xylanase produced byEFSA journal. European Food Safety Authority · 2022Article
- Review
- Functional characterization of a highly specific L-arabinose transporter from Trichoderma reesei.Microbial cell factories · 2021Article
- A Putative Lignin Copper Oxidase fromJournal of fungi (Basel, Switzerland) · 2021Article
- Electrophysiological characterization of a diverse group of sugar transporters from Trichoderma reesei.Scientific reports · 2021Article
- Article
- Genetic Transformation of Trichoderma spp.Methods in molecular biology (Clifton, N.J.) · 2021Article
- Combined Comparative Genomics and Gene Expression Analyses Provide Insights into the Terpene Synthases Inventory inMicroorganisms · 2020Article
- instaGRAAL: chromosome-level quality scaffolding of genomes using a proximity ligation-based scaffolder.Genome biology · 2020Article
- Studies on sugar transporter CRT1 reveal new characteristics that are critical for cellulase induction inBiotechnology for biofuels · 2020Article
- Rational engineering of theBiotechnology for biofuels · 2020Article
- Enhancement of cellulase production in Trichoderma reesei RUT-C30 by comparative genomic screening.Microbial cell factories · 2019Article
- Enhanced cellulase production by decreasing intercellular pH through HBiotechnology for biofuels · 2019Article
- Protein hyperproduction in fungi by design.Applied microbiology and biotechnology · 2018Review
- Correction to: Proximity ligation scaffolding and comparison of twoBiotechnology for biofuels · 2018Article
- The mechanism by which a distinguishing arabinofuranosidase can cope with internal di-substitutions in arabinoxylans.Biotechnology for biofuels · 2018Article
Corrections and comments
- Erratum issued
Authors and funding
8 authors.
Funding
Abstract
backgroundThe presence of low complexity and repeated regions in genomes often results in difficulties to assemble sequencing data into full chromosomes. However, the availability of full genome scaffolds is essential to several investigations, regarding for instance the evolution of entire clades, the analysis of chromosome rearrangements, and is pivotal to sexual crossing studies. In non-conventional but industrially relevant model organisms, such as the ascomycete
resultsThe chromosome scaffolds of
conclusionsThe GRAAL program allowed us to generate the karyotype of the Rut-C30 strain, and from there to predict chromosome structure for most
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.