Evidence map›Paper›PMID 28615672›Full record

ArticleScientific reports2017

Reconstruction of pathway modification induced by nicotinamide using multi-omic network analyses in triple negative breast cancer.

Ji Young Kim, Hyebin Lee, Jongmin Woo, Wang Yue, Kwangsoo Kim, Seongmin Choi, Ja-June Jang, Youngsoo Kim, In Ae Park, Dohyun Han and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.9field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
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  6. Incorporating Machine Learning into Established Bioinformatics Frameworks.International journal of molecular sciences · 2021
    Review
  7. Moesin (Cancers · 2020
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Ji Young KimDepartment of Pathology, Seoul National University Hospital, Seoul National University College of Medicine, Seoul, South Korea.
Hyebin LeeDepartment of Radiation Oncology, Kangbuk Samsung Hospital, Sungkyunkwan University School of Medicine, Seoul, South Korea.
Jongmin WooDepartment of Biomedical Sciences, Seoul National University College of Medicine, Seoul, South Korea.
Wang YueDepartment of Pathology, Seoul National University Hospital, Seoul National University College of Medicine, Seoul, South Korea.
Kwangsoo KimDivision of Clinical Bioinformatics, Biomedical Research Institute, Seoul National University Hospital, Seoul, South Korea.
Seongmin ChoiDivision of Clinical Bioinformatics, Biomedical Research Institute, Seoul National University Hospital, Seoul, South Korea.
Ja-June JangDepartment of Pathology, Seoul National University Hospital, Seoul National University College of Medicine, Seoul, South Korea.
Youngsoo KimDepartment of Biomedical Sciences, Seoul National University College of Medicine, Seoul, South Korea.ORCID 0000-0001-8881-0662
In Ae ParkDepartment of Pathology, Seoul National University Hospital, Seoul National University College of Medicine, Seoul, South Korea.
Dohyun HanProteomics Core Facility, Biomedical Research Institute, Seoul National University Hospital, Seoul, South Korea. hdh03@snu.ac.kr.ORCID 0000-0002-0841-1598
Han Suk RyuDepartment of Pathology, Seoul National University Hospital, Seoul National University College of Medicine, Seoul, South Korea. karlnash@naver.com.
Seoul National University Hospital · KRSeoul National University · KRKangbuk Samsung Hospital · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Triple negative breast cancer (TNBC) is characterized by an aggressive biological behavior in the absence of a specific target agent. Nicotinamide has recently been proven to be a novel therapeutic agent for skin tumors in an ONTRAC trial. We performed combinatory transcriptomic and in-depth proteomic analyses to characterize the network of molecular interactions in TNBC cells treated with nicotinamide. The multi-omic profiles revealed that nicotinamide drives significant functional alterations related to major cellular pathways, including the cell cycle, DNA replication, apoptosis and DNA damage repair. We further elaborated the global interaction networks of molecular events via nicotinamide-inducible expression changes at the mRNA and functional protein levels. This approach indicated that nicotinamide treatment rewires interaction networks toward dysfunction in DNA damage repair and away from a pro-growth state in TNBC. To our knowledge, the high-resolution network interactions identified in the present study provide the first evidence to comprehensively support the hypothesis of nicotinamide as a novel therapeutic agent in TNBC.

Indexed as

GenomicsProteomicsComputational BiologyFemaleGene Expression Regulation, NeoplasticGene Regulatory NetworksHumansModels, BiologicalMolecular Sequence AnnotationNiacinamideSignal TransductionTriple Negative Breast NeoplasmsNiacinamide

Identifiers

PMID28615672
PMCPMC5471278
OpenAlexW2621997193

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.