Evidence map›Paper›PMID 28615637›Full record

ArticleScientific reports2017

Defects in autophagosome-lysosome fusion underlie Vici syndrome, a neurodevelopmental disorder with multisystem involvement.

Ikumi Hori, Takanobu Otomo, Mitsuko Nakashima, Fuyuki Miya, Yutaka Negishi, Hideaki Shiraishi, Yutaka Nonoda, Shinichi Magara, Jun Tohyama, Nobuhiko Okamoto and 18 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 67 citations in OpenAlex.

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  20. NovelCase reports in genetics · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors at 18 institutions in 1 country.

Ikumi HoriDepartment of Pediatrics and Neonatology, Nagoya City University Graduate School of Medical Sciences, Nagoya, 467-8601, Japan.
Takanobu OtomoDepartment of Genetics, Osaka University Graduate School of Medicine, Osaka, 565-0871, Japan.
Mitsuko NakashimaDepartment of Human Genetics, Yokohama City University Graduate School of Medicine, Yokohama, 236-0004, Japan.
Fuyuki MiyaDepartment of Medical Science Mathematics, Medical Research Institute, Tokyo Medical and Dental University, Tokyo, 113-8510, Japan.
Yutaka NegishiDepartment of Pediatrics and Neonatology, Nagoya City University Graduate School of Medical Sciences, Nagoya, 467-8601, Japan.
Hideaki ShiraishiDepartment of Pediatrics, Hokkaido University Graduate School of Medicine, Sapporo, 060-8638, Japan.
Yutaka NonodaDepartment of Pediatrics, Kitasato University School of Medicine, Sagamihara, 252-0373, Japan.
Shinichi MagaraDepartment of Pediatrics, Epilepsy Center, Nishi-Niigata Chuo National Hospital, Niigata, 950-2085, Japan.
Jun TohyamaDepartment of Pediatrics, Epilepsy Center, Nishi-Niigata Chuo National Hospital, Niigata, 950-2085, Japan.
Nobuhiko OkamotoDepartment of Medical Genetics, Osaka Medical Center and Research Institute for Maternal and Child Health, Osaka, 594-1101, Japan.
Takeshi KumagaiDepartment of Pediatrics, Wakayama Medical University, Wakayama, 641-8509, Japan.
Konomi ShimodaDepartment of Pediatrics, Graduate School of Medicine, The University of Tokyo, Tokyo, 113-8655, Japan.
Yoshiya YukitakeDepartment of Neonatology, Ibaraki Children's Hospital, Mito, 311-4145, Japan.
Daigo KajikawaDepartment of Child Health, Faculty of Medicine, Tsukuba University, Tsukuba, 305-8576, Japan.
Tomohiro MorioDepartment of Pediatrics, Faculty of Medicine, Tokyo Medical and Dental University, Tokyo, 113-8519, Japan.
Ayako HattoriDepartment of Pediatrics and Neonatology, Nagoya City University Graduate School of Medical Sciences, Nagoya, 467-8601, Japan.
Motoo NakagawaDepartment of Radiology, Nagoya City University Graduate School of Medical Sciences, Nagoya, 467-8601, Japan.
Naoki AndoDepartment of Pediatrics and Neonatology, Nagoya City University Graduate School of Medical Sciences, Nagoya, 467-8601, Japan.
Ichizo NishinoDepartment of Neuromuscular Research, National Institute of Neuroscience, National Center of Neurology and Psychiatry, Tokyo, 187-8551, Japan.ORCID 0000-0001-9452-112X
Mitsuhiro KatoDepartment of Pediatrics, Showa University School of Medicine, Tokyo, 142-8666, Japan.
Tatsuhiko TsunodaDepartment of Medical Science Mathematics, Medical Research Institute, Tokyo Medical and Dental University, Tokyo, 113-8510, Japan.
Hirotomo SaitsuDepartment of Human Genetics, Yokohama City University Graduate School of Medicine, Yokohama, 236-0004, Japan.ORCID 0000-0003-0723-0960
Yonehiro KanemuraDivision of Regenerative Medicine, Institute for Clinical Research, Osaka National Hospital, National Hospital Organization, Osaka, 540-0006, Japan.
Mami YamasakiDepartment of Neurosurgery, Takatsuki General Hospital, Osaka, 569-1192, Japan.
Kenjiro KosakiCenter for Medical Genetics, Keio University School of Medicine, Tokyo, 160-8582, Japan.
Naomichi MatsumotoDepartment of Human Genetics, Yokohama City University Graduate School of Medicine, Yokohama, 236-0004, Japan.
Tamotsu YoshimoriDepartment of Genetics, Osaka University Graduate School of Medicine, Osaka, 565-0871, Japan.
Shinji SaitohDepartment of Pediatrics and Neonatology, Nagoya City University Graduate School of Medical Sciences, Nagoya, 467-8601, Japan. ss11@med.nagoya-cu.ac.jp.ORCID 0000-0001-6911-3351
Nagoya City University · JPTokyo Medical and Dental University · JPNishi Niigata Chuo National Hospital · JPThe University of Osaka · JPYokohama City University · JPHamamatsu University School of Medicine · JPHokkaido University · JPIbaraki Children's Hospital · JPKeio University · JPKitasato University · JPNational Center of Neurology and Psychiatry · JPOsaka International Cancer Institute · JPOsaka National Hospital · JPShowa University · JPTakatsuki General Hospital · JPThe University of Tokyo · JPUniversity of Tsukuba · JPWakayama Medical University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Vici syndrome (VICIS) is a rare, autosomal recessive neurodevelopmental disorder with multisystem involvement characterized by agenesis of the corpus callosum, cataracts, cardiomyopathy, combined immunodeficiency, developmental delay, and hypopigmentation. Mutations in EPG5, a gene that encodes a key autophagy regulator, have been shown to cause VICIS, however, the precise pathomechanism underlying VICIS is yet to be clarified. Here, we describe detailed clinical (including brain MRI and muscle biopsy) and genetic features of nine Japanese patients with VICIS. Genetic dissection of these nine patients from seven families identified 14 causative mutations in EPG5. These included five nonsense, two frameshift, three splicing, one missense, and one multi-exon deletion mutations, and two initiation codon variants. Furthermore, cultured skin fibroblasts (SFs) from two affected patients demonstrated partial autophagic dysfunction. To investigate the function of EPG5, siRNA based EPG5 knock-down, and CRISPR/Cas9 mediated EPG5 knock-out HeLa cells were generated. EPG5-depleted cells exhibited a complete block of autophagic flux caused by defective autophagosome-lysosome fusion. Unexpectedly, endocytic degradation was normal in both VICIS SFs and EPG5 depleted cells, suggesting that EPG5 function is limited to the regulation of autophagosome-lysosome fusion.

Indexed as

Agenesis of Corpus CallosumAsian PeopleAutophagosomesAutophagy-Related ProteinsBiopsyBrainCataractEpithelial CellsFamily HealthFibroblastsGene Knockdown TechniquesGene Knockout TechniquesHeLa CellsHumansLysosomal Membrane ProteinsLysosomesAutophagy-Related ProteinsEPG5 protein, humanLysosomal Membrane ProteinsProteinsVesicular Transport Proteins

Identifiers

PMID28615637
PMCPMC5471274
OpenAlexW2623668026

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.