Evidence map›Paper›PMID 28615624›Full record

ArticleScientific reports2017

Circulation of HAdV-41 with diverse genome types and recombination in acute gastroenteritis among children in Shanghai.

Peng Li, Lang Yang, Jiayin Guo, Wenwei Zou, Xuebin Xu, Xiaoxia Yang, Xinying Du, Shaofu Qiu, Hongbin Song

Open access · goldAbstract read
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Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Peng LiInstitute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing, 100071, China.
Lang YangInstitute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing, 100071, China.
Jiayin GuoShanghai Changning District Center for Disease Control and Prevention, Shanghai, 200051, China.
Wenwei ZouShanghai Pudong New Area Center for Disease Control and Prevention, Shanghai, 200136, China.
Xuebin XuShanghai Center for Disease Control and Prevention, Shanghai, 200236, China.
Xiaoxia YangInstitute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing, 100071, China.
Xinying DuInstitute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing, 100071, China.
Shaofu QiuInstitute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing, 100071, China. qiushf0613@hotmail.com.
Hongbin SongInstitute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing, 100071, China. hongbinsong@263.net.
Academy of Military Medical Sciences · CNShanghai Municipal Center For Disease Control Prevention · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Human adenovirus F (HAdV-F) is one of the major causative species detected in acute gastroenteritis in children worldwide. HAdV-F is composed of serotypes 40 and 41. Most studies have reported the prevalence of HAdV-41 and focused on its epidemiologic characteristics. In this study, seventeen samples were identified as HAdV-41 out of 273 fecal specimens from children with acute diarrhea in Shanghai. Five isolates were isolated and subjected to whole genome sequencing and analysis to characterize the genetic variation and evolution. Full genome analysis revealed low genetic variation (99.07-99.92% identity) among the isolates, and InDels are observed in the E2A gene and the hexon gene compared to the reference strain NIVD103. Phylogenetic analysis showed that all isolates mainly formed two genome-type clusters but with incongruence in the trees of whole genomes and individual genes. The recombination breakpoints of the five isolates were inferred by the Recombination Detection Program (RDP) and varied in the number and location of the recombination events, indicating different evolution origins. Overall, our study highlights the genetic diversity of HAdV-41 isolates circulating in Shanghai, which may have evolved from inter-strain recombination.

Indexed as

GenotypeAdenoviruses, HumanAdenovirus Infections, HumanAdolescentChildChild, PreschoolChinaDNA, ViralFecesGastroenteritisGenetic VariationHumansInfantPhylogenyPrevalenceRecombination, GeneticDNA, Viral

Identifiers

PMID28615624
PMCPMC5471248
OpenAlexW2621810984

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.