Evidence map›Paper›PMID 28615073›Full record

ArticleGenome biology2017

CRISPR/Cas9-mediated genome editing induces exon skipping by alternative splicing or exon deletion.

Haiwei Mou, Jordan L Smith, Lingtao Peng, Hao Yin, Jill Moore, Xiao-Ou Zhang, Chun-Qing Song, Ankur Sheel, Qiongqiong Wu, Deniz M Ozata and 7 more

Abstract read
In one paragraph

Article in Genome biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 109 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
109citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

109 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
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  5. Review
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  14. Review
  15. Review
  16. Strategies for programmable manipulation of alternative splicing.Current opinion in genetics & development · 2024
    Review
  17. AAV vector-derived elements integrate into Cas9-generated double-strand breaks and disrupt gene transcription.Molecular therapy : the journal of the American Society of Gene Therapy · 2024
    Article
  18. Article
  19. Article
  20. Review

49 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Haiwei MouRNA Therapeutics Institute, University of Massachusetts Medical School, Worcester, MA, 01605, USA.
Jordan L SmithRNA Therapeutics Institute, University of Massachusetts Medical School, Worcester, MA, 01605, USA.
Lingtao PengRNA Therapeutics Institute, University of Massachusetts Medical School, Worcester, MA, 01605, USA.
Hao YinDavid H. Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, 02142, USA.
Jill MooreProgram in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, 01605, USA.
Xiao-Ou ZhangProgram in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, 01605, USA.
Chun-Qing SongRNA Therapeutics Institute, University of Massachusetts Medical School, Worcester, MA, 01605, USA.
Ankur SheelRNA Therapeutics Institute, University of Massachusetts Medical School, Worcester, MA, 01605, USA.
Qiongqiong WuDavid H. Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, 02142, USA.
Deniz M OzataRNA Therapeutics Institute, University of Massachusetts Medical School, Worcester, MA, 01605, USA.
Yingxiang LiProgram in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, 01605, USA.
Daniel G AndersonDavid H. Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, 02142, USA.
Charles P EmersonWellstone Muscular Dystrophy Program, Department of Neurology, University of Massachusetts Medical School, Worcester, MA, 01605, USA.
Erik J SontheimerRNA Therapeutics Institute, University of Massachusetts Medical School, Worcester, MA, 01605, USA.
Melissa J MooreRNA Therapeutics Institute, University of Massachusetts Medical School, Worcester, MA, 01605, USA. Melissa.Moore@umassmed.edu.
Zhiping WengDavid H. Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, 02142, USA. Zhiping.Weng@umassmed.edu.
Wen XueRNA Therapeutics Institute, University of Massachusetts Medical School, Worcester, MA, 01605, USA. Wen.Xue@umassmed.edu.ORCID 0000-0002-9797-8042

Funding

Viral Vector CoreP01HL131471 · NHLBI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI XUE, WEN · 2016 to 2020
$11.3M
The Development of Clinical Grade, Targeted Magnetic NanoparticlesU54CA151884 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI LANGER, ROBERT SAMUEL · 2010 to 2014
$11.3M
Medical Scientist Training at UMMS Administrative SupplementT32GM107000 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI KIEFE, CATARINA I. · 2013 to 2022
$4.9M
CRISPR-based modular therapy for precision medicineDP2HL137167 · NHLBI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI XUE, WEN · 2016 to 2016
$2.5M
Engineered Cas9 Nucleases with Single-Genomic-Site Precision for CYBB CorrectionR01GM115911 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI SONTHEIMER, ERIK J., WOLFE, SCOT A · 2016 to 2019
$1.6M
Investigating microRNA miR-34a in lung cancer development and therapyR00CA169512 · NCI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI XUE, WEN · 2014 to 2016
$747k
NCI NIH HHS R00 CA169512NCI NIH HHS U54 CA151884NHLBI NIH HHS DP2 HL137167NHLBI NIH HHS P01 HL131471NIGMS NIH HHS R01 GM115911NIGMS NIH HHS T32 GM107000
6 · The paper itself

Abstract

CRISPR is widely used to disrupt gene function by inducing small insertions and deletions. Here, we show that some single-guide RNAs (sgRNAs) can induce exon skipping or large genomic deletions that delete exons. For example, CRISPR-mediated editing of β-catenin exon 3, which encodes an autoinhibitory domain, induces partial skipping of the in-frame exon and nuclear accumulation of β-catenin. A single sgRNA can induce small insertions or deletions that partially alter splicing or unexpected larger deletions that remove exons. Exon skipping adds to the unexpected outcomes that must be accounted for, and perhaps taken advantage of, in CRISPR experiments.

Indexed as

CRISPR-Cas SystemsGene EditingAlternative Splicingbeta CateninExonsGenome, HumanHumansRNA, Guide, CRISPR-Cas SystemsSequence Deletionbeta CateninCTNNB1 protein, humanRNA, Guide, CRISPR-Cas Systems

Identifiers

PMID28615073
PMCPMC5470253

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.