ArticleBMC genomics2017
Loci and candidate genes conferring resistance to soybean cyst nematode HG type 2.5.7.
Article in BMC genomics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.
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Who cites it
16 citing papers in PubMed.
- Genome-wide association study of soybean germplasm derived from modern Canadian and Chinese soybean cultivars to identify novel genes conferring soybean cyst nematode resistance.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Identification of hub genes regulating isoflavone accumulation in soybean seedsFrontiers in plant science · 2023Article
- Breeding for disease resistance in soybean: a global perspective.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Review
- A Broad Review of Soybean Research on the Ongoing Race to Overcome Soybean Cyst Nematode.Biology · 2022Review
- Genome-wide association studies for soybean epicotyl length in two environments using 3VmrMLM.Frontiers in plant science · 2022Article
- Fluorescent Soybean Hairy Root Construction and Its Application in the Soybean-Nematode Interaction: An Investigation.Biology · 2021Article
- Identification of the Complex Interplay Between Nematode-Related lncRNAs and Their Target Genes inFrontiers in plant science · 2021Article
- Genome-wide association studies of ionomic and agronomic traits in USDA mini core collection of rice and comparative analyses of different mapping methods.BMC plant biology · 2020Article
- Molecular-Assisted Distinctness and Uniformity Testing Using SLAF-Sequencing Approach in Soybean.Genes · 2020Article
- Identification of genetic loci and candidate genes related to soybean flowering through genome wide association study.BMC genomics · 2019Article
- Dissection of soybean populations according to selection signatures based on whole-genome sequences.GigaScience · 2019Article
- Genome-wide association study of inflorescence length of cultivated soybean based on the high-throughout single-nucleotide markers.Molecular genetics and genomics : MGG · 2019Article
- Loci and candidate genes in soybean that confer resistance to Fusarium graminearum.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019Article
- Genome-wide association and transcriptional studies reveal novel genes for unsaturated fatty acid synthesis in a panel of soybean accessions.BMC genomics · 2019Article
- Genome-Wide Association Analysis Pinpoints Additional Major Genomic Regions Conferring Resistance to Soybean Cyst Nematode (Frontiers in plant science · 2019Article
- Identification of the Genomic Region Underlying Seed Weight per Plant in Soybean (Frontiers in plant science · 2018Article
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Authors and funding
10 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundSoybean (Glycine max L. Merr.) cyst nematode (SCN, Heterodera glycines I,) is a major pest of soybean worldwide. The most effective strategy to control this pest involves the use of resistant cultivars. The aim of the present study was to investigate the genome-wide genetic architecture of resistance to SCN HG Type 2.5.7 (race 1) in landrace and elite cultivated soybeans.
resultsA total of 200 diverse soybean accessions were screened for resistance to SCN HG Type 2.5.7 and genotyped through sequencing using the Specific Locus Amplified Fragment Sequencing (SLAF-seq) approach with a 6.14-fold average sequencing depth. A total of 33,194 SNPs were identified with minor allele frequencies (MAF) over 4%, covering 97% of all the genotypes. Genome-wide association mapping (GWAS) revealed thirteen SNPs associated with resistance to SCN HG Type 2.5.7. These SNPs were distributed on five chromosomes (Chr), including Chr7, 8, 14, 15 and 18. Four SNPs were novel resistance loci and nine SNPs were located near known QTL. A total of 30 genes were identified as candidate genes underlying SCN resistance.
conclusionsA total of sixteen novel soybean accessions were identified with significant resistance to HG Type 2.5.7. The beneficial alleles and candidate genes identified by GWAS might be valuable for improving marker-assisted breeding efficiency and exploring the molecular mechanisms underlying SCN resistance.
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