Evidence map›Paper›PMID 28614790›Full record

ArticleJCI insight2017

Genomic landscape and evolution of metastatic chromophobe renal cell carcinoma.

Jozefina Casuscelli, Nils Weinhold, Gunes Gundem, Lu Wang, Emily C Zabor, Esther Drill, Patricia I Wang, Gouri J Nanjangud, Almedina Redzematovic, Amrita M Nargund and 16 more

Abstract read
In one paragraph

Article in JCI insight, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. New developments in existing WHO entities and evolving molecular concepts: The Genitourinary Pathology Society (GUPS) update on renal neoplasia.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2021
    Guideline
  2. Article
  3. Profilin-1 Promotes Chromophobe Renal Cell Carcinoma Malignancy.bioRxiv : the preprint server for biology · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. The Role of the PAX Genes in Renal Cell Carcinoma.International journal of molecular sciences · 2024
    Review
  12. Article
  13. Article
  14. Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. Renal Cell Carcinoma of Variant Histology: Biology and Therapies.Hematology/oncology clinics of North America · 2023
    Review
  20. The Role of the Pathologist in Renal Cell Carcinoma Management.Hematology/oncology clinics of North America · 2023
    Review

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors.

Jozefina CasuscelliDepartment of Human Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Nils WeinholdDepartment of Radiation Oncology.
Gunes GundemDepartment of Epidemiology and Biostatistics.
Lu WangDepartment of Pathology.
Emily C ZaborDepartment of Epidemiology and Biostatistics.
Esther DrillDepartment of Epidemiology and Biostatistics.
Patricia I WangDepartment of Human Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Gouri J NanjangudMolecular Cytogenetics Core Facility.
Almedina RedzematovicDepartment of Human Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Amrita M NargundDepartment of Human Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Brandon J ManleyDepartment of Surgery, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Maria E ArcilaDepartment of Pathology.
Nicholas M DoninDepartment of Urology, UCLA, Los Angeles, California, USA.
John C ChevilleDepartment of Pathology and.
R Houston ThompsonDepartment of Urology, Mayo Clinic, Rochester, Minnesota, USA.
Allan J PantuckDepartment of Urology, UCLA, Los Angeles, California, USA.
Paul RussoDepartment of Surgery, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Emily H ChengDepartment of Human Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
William LeeDepartment of Radiation Oncology.
Satish K TickooDepartment of Pathology.
Irina OstrovnayaDepartment of Epidemiology and Biostatistics.
Chad J CreightonHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA.
Elli PapaemmanuilDepartment of Epidemiology and Biostatistics.
Venkatraman E SeshanDepartment of Epidemiology and Biostatistics.
A Ari HakimiDepartment of Surgery, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
James J HsiehMolecular Oncology, Department of Medicine, Siteman Cancer Center, Washington University, St. Louis, Missouri, USA.

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Tumor BiologyP30CA125123 · NCI · BAYLOR COLLEGE OF MEDICINE · PI DAVID R ROWLEY · 2007 to 2026
$73.9M
UROLOGY ONCOLOGY RESEARCH TRAINING GRANTT32CA082088 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Brett Stewart Carver · 1999 to 2026
$7.1M
Cancer Research UK 21019NCI NIH HHS P30 CA008748NCI NIH HHS P30 CA125123NCI NIH HHS T32 CA082088
6 · The paper itself

Abstract

Chromophobe renal cell carcinoma (chRCC) typically shows ~7 chromosome losses (1, 2, 6, 10, 13, 17, and 21) and ~31 exonic somatic mutations, yet carries ~5%-10% metastatic incidence. Since extensive chromosomal losses can generate proteotoxic stress and compromise cellular proliferation, it is intriguing how chRCC, a tumor with extensive chromosome losses and a low number of somatic mutations, can develop lethal metastases. Genomic features distinguishing metastatic from nonmetastatic chRCC are unknown. An integrated approach, including whole-genome sequencing (WGS), targeted ultradeep cancer gene sequencing, and chromosome analyses (FACETS, OncoScan, and FISH), was performed on 79 chRCC patients including 38 metastatic (M-chRCC) cases. We demonstrate that TP53 mutations (58%), PTEN mutations (24%), and imbalanced chromosome duplication (ICD, duplication of ≥ 3 chromosomes) (25%) were enriched in M-chRCC. Reconstruction of the subclonal composition of paired primary-metastatic chRCC tumors supports the role of TP53, PTEN, and ICD in metastatic evolution. Finally, the presence of these 3 genomic features in primary tumors of both The Cancer Genome Atlas kidney chromophobe (KICH) (n = 64) and M-chRCC (n = 35) cohorts was associated with worse survival. In summary, our study provides genomic insights into the metastatic progression of chRCC and identifies TP53 mutations, PTEN mutations, and ICD as high-risk features.

Indexed as

GeneticsOncology

Identifiers

PMID28614790
PMCPMC5470887

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.