ArticleFrontiers in neuroinformatics2017
ATPP: A Pipeline for Automatic Tractography-Based Brain Parcellation.
Article in Frontiers in neuroinformatics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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Who cites it
14 citing papers in PubMed.
- Comparative Analysis of Human-Chimpanzee Divergence in Brain Connectivity and its Genetic Correlates.bioRxiv : the preprint server for biology · 2024Article
- Disrupted morphological brain network organization in subjective cognitive decline and mild cognitive impairment.Brain imaging and behavior · 2024Article
- Striatonigrostriatal connectivity-based cross-species parcellation of human and macaque substantia nigra.Human brain mapping · 2023Article
- Mapping cross-species connectome atlas of human and macaque striatum.Cerebral cortex (New York, N.Y. : 1991) · 2023Article
- Evaluation of functional MRI-based human brain parcellation: a review.Journal of neurophysiology · 2022Review
- Connectivity-based parcellation of normal and anatomically distorted human cerebral cortex.Human brain mapping · 2022Article
- Corresponding anatomical of the macaque superior parietal lobule areas 5 (PE) subdivision reveal similar connectivity patterns with humans.Frontiers in neuroscience · 2022Article
- MonkeyCBP: A Toolbox for Connectivity-Based Parcellation of Monkey Brain.Frontiers in neuroinformatics · 2020Article
- From Coarse to Fine-Grained Parcellation of the Cortical Surface Using a Fiber-Bundle Atlas.Frontiers in neuroinformatics · 2020Article
- Delineating functional segregations of the human middle temporal gyrus with resting-state functional connectivity and coactivation patterns.Human brain mapping · 2019Article
- Interspecies Differences in the Connectivity of Ventral Striatal Components Between Humans and Macaques.Frontiers in neuroscience · 2019Article
- Fine-Grained Parcellation of the Macaque Nucleus Accumbens by High-Resolution Diffusion Tensor Tractography.Frontiers in neuroscience · 2019Article
- A digital 3D atlas of the marmoset brain based on multi-modal MRI.NeuroImage · 2018Article
- Highly Reproducible Whole Brain Parcellation in Individuals via Voxel Annotation with Fiber Clusters.Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted InterventionArticle
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7 authors.
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Abstract
There is a longstanding effort to parcellate brain into areas based on micro-structural, macro-structural, or connectional features, forming various brain atlases. Among them, connectivity-based parcellation gains much emphasis, especially with the considerable progress of multimodal magnetic resonance imaging in the past two decades. The Brainnetome Atlas published recently is such an atlas that follows the framework of connectivity-based parcellation. However, in the construction of the atlas, the deluge of high resolution multimodal MRI data and time-consuming computation poses challenges and there is still short of publically available tools dedicated to parcellation. In this paper, we present an integrated open source pipeline (https://www.nitrc.org/projects/atpp), named Automatic Tractography-based Parcellation Pipeline (ATPP) to realize the framework of parcellation with automatic processing and massive parallel computing. ATPP is developed to have a powerful and flexible command line version, taking multiple regions of interest as input, as well as a user-friendly graphical user interface version for parcellating single region of interest. We demonstrate the two versions by parcellating two brain regions, left precentral gyrus and middle frontal gyrus, on two independent datasets. In addition, ATPP has been successfully utilized and fully validated in a variety of brain regions and the human Brainnetome Atlas, showing the capacity to greatly facilitate brain parcellation.
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