Evidence map›Paper›PMID 28611467›Full record

ArticleScientific reports2017

Phytohormonal crosstalk modulates the expression of miR166/165s, target Class III HD-ZIPs, and KANADI genes during root growth in Arabidopsis thaliana.

Archita Singh, Shradha Roy, Sharmila Singh, Shabari Sarkar Das, Vibhav Gautam, Sandeep Yadav, Ashutosh Kumar, Alka Singh, Sukanya Samantha, Ananda K Sarkar

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
26.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 120 citations in OpenAlex.

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  13. miRNA mediated regulation of nitrogen response and nitrogen use efficiency of plants: the case of wheat.Physiology and molecular biology of plants : an international journal of functional plant biology · 2023
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  14. The miR166d/International journal of molecular sciences · 2023
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  19. Salicylic Acid in Root Growth and Development.International journal of molecular sciences · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Archita SinghNational Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, 110067, India.
Shradha RoyNational Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, 110067, India.
Sharmila SinghNational Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, 110067, India.
Shabari Sarkar DasNational Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, 110067, India.
Vibhav GautamNational Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, 110067, India.
Sandeep YadavNational Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, 110067, India.
Ashutosh KumarNational Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, 110067, India.
Alka SinghNational Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, 110067, India.
Sukanya SamanthaNational Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, 110067, India.
Ananda K SarkarNational Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, 110067, India. aksarkar@nipgr.ac.in.
National Institute of Plant Genome Research · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Both phytohormones and non-coding microRNAs (miRNAs) play important role in root development in Arabidopsis thaliana. Mature miR166/165 s, which are derived from precursor transcripts of concerned genes, regulate developmental processes, including leaf and root patterning, by targeting Class III HOMEODOMAIN LEUCINE-ZIPPER (HD-ZIP III) transcription factors (TFs). However, their regulation through hormones remained poorly understood. Here, we show that several phytohormones dynamically regulate the spatio-temporal expression pattern of miR166/165 and target HD-ZIP IIIs in developing roots. Hormone signaling pathway mutants show differential expression pattern of miR166/165, providing further genetic evidence for multilayered regulation of these genes through phytohormones. We further show that a crosstalk of at least six different phytohormones regulate the miR166/165, their target HD-ZIP IIIs, and KANADI (KANs). Our results suggest that HD-ZIP IIIs mediated root development is modulated both transcriptionally through phytohormones and KANs, and post-transcriptionally by miR166/165 that in turn are also regulated by the phytohormonal crosstalk.

Indexed as

Gene Expression Regulation, PlantArabidopsisArabidopsis ProteinsGene Expression Regulation, DevelopmentalMicroRNAsPlant Growth RegulatorsPlant RootsTranscription FactorsArabidopsis ProteinsHB1 protein, ArabidopsisKANADI protein, ArabidopsisMicroRNAsMIRN165 microRNA, ArabidopsisMIRN166 microRNA, ArabidopsisPlant Growth RegulatorsTranscription Factors

Identifiers

PMID28611467
PMCPMC5469759
OpenAlexW2623727886

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.