Evidence map›Paper›PMID 28611215›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

Genome-wide CRISPR screen identifies HNRNPL as a prostate cancer dependency regulating RNA splicing.

Teng Fei, Yiwen Chen, Tengfei Xiao, Wei Li, Laura Cato, Peng Zhang, Maura B Cotter, Michaela Bowden, Rosina T Lis, Shuang G Zhao and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 228 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
228citing papers in PubMed, 1 pooled it
14.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

228 citing papers in PubMed, 1 synthesis or guideline pooled it, 354 citations in OpenAlex.

  1. The Emerging Role of Circular RNAs in Prostate Cancer: A Systematic Review.Frontiers in cell and developmental biology · 2021
    Pooled it
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  9. The emerging role of mFrontiers in immunology · 2026
    Review
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  11. The Interaction ofInternational journal of biological sciences · 2026
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168 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 7 institutions in 3 countries.

Teng FeiCollege of Life and Health Sciences, Northeastern University, Shenyang 110819, People's Republic of China; feiteng@mail.neu.edu.cn xsliu@jimmy.harvard.edu myles_brown@dfci.harvard.edu.
Yiwen ChenDepartment of Bioinformatics and Computational Biology, Division of Quantitative Sciences, The University of Texas MD Anderson Cancer Center, Houston, TX 77030.
Tengfei XiaoDivision of Molecular and Cellular Oncology, Department of Medical Oncology, Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, Boston, MA 02215.
Wei LiDepartment of Biostatistics and Computational Biology, Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute and Harvard School of Public Health, Boston, MA 02215.
Laura CatoDivision of Molecular and Cellular Oncology, Department of Medical Oncology, Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, Boston, MA 02215.
Peng ZhangDepartment of Bioinformatics and Computational Biology, Division of Quantitative Sciences, The University of Texas MD Anderson Cancer Center, Houston, TX 77030.
Maura B CotterDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02215.
Michaela BowdenDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02215.
Rosina T LisDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02215.
Shuang G ZhaoMichigan Center for Translational Pathology, Comprehensive Cancer Center, University of Michigan, Ann Arbor, MI 48109.
Qiu WuDepartment of Bioinformatics, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China.
Felix Y FengMichigan Center for Translational Pathology, Comprehensive Cancer Center, University of Michigan, Ann Arbor, MI 48109.
Massimo LodaDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02215.
Housheng Hansen HePrincess Margaret Cancer Center, University Health Network, Toronto, ON, Canada M5G1L7.ORCID 0000-0003-2898-3363
X Shirley LiuDepartment of Biostatistics and Computational Biology, Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute and Harvard School of Public Health, Boston, MA 02215; feiteng@mail.neu.edu.cn xsliu@jimmy.harvard.edu myles_brown@dfci.harvard.edu.
Myles BrownDivision of Molecular and Cellular Oncology, Department of Medical Oncology, Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, Boston, MA 02215; feiteng@mail.neu.edu.cn xsliu@jimmy.harvard.edu myles_brown@dfci.harvard.edu.
Brigham and Women's Hospital · USDana-Farber Cancer Institute · USThe University of Texas MD Anderson Cancer Center · USUniversity of Michigan · USBroad Institute · USTongji University · CNUniversity Health Network · CA

Funding

Tumor and Circulating Markers as Links Between Obesity and Lethal Prostate CanceP50CA090381 · NCI · DANA-FARBER CANCER INSTITUTE · PI LODA, MASSIMO · 2002 to 2017
$36.2M
Steroid Metabolism in Castration-Resistant Prostate CancerP01CA163227 · NCI · BETH ISRAEL DEACONESS MEDICAL CENTER · PI Steven P. Balk · 2013 to 2026
$25.0M
Large-Scale In Vivo Functional Characterization of the Human CistromeR01HG008728 · NHGRI · DANA-FARBER CANCER INST · PI BROWN, MYLES A, LIU, XIAOLE SHIRLEY · 2015 to 2017
$2.2M
Computational Methods for Genome-Wide CRISPR ScreensR01HG008927 · NHGRI · DANA-FARBER CANCER INST · PI LIU, XIAOLE SHIRLEY · 2016 to 2018
$1.6M
An integrated approach to dissect the functional network of large non-coding RNAR00CA175290 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI CHEN, YIWEN · 2015 to 2017
$673k
NCI NIH HHS P01 CA163227NCI NIH HHS P50 CA090381NCI NIH HHS R00 CA175290NHGRI NIH HHS R01 HG008728NHGRI NIH HHS R01 HG008927
6 · The paper itself

Abstract

Alternative RNA splicing plays an important role in cancer. To determine which factors involved in RNA processing are essential in prostate cancer, we performed a genome-wide CRISPR/Cas9 knockout screen to identify the genes that are required for prostate cancer growth. Functional annotation defined a set of essential spliceosome and RNA binding protein (RBP) genes, including most notably heterogeneous nuclear ribonucleoprotein L (HNRNPL). We defined the HNRNPL-bound RNA landscape by RNA immunoprecipitation coupled with next-generation sequencing and linked these RBP-RNA interactions to changes in RNA processing. HNRNPL directly regulates the alternative splicing of a set of RNAs, including those encoding the androgen receptor, the key lineage-specific prostate cancer oncogene. HNRNPL also regulates circular RNA formation via back splicing. Importantly, both HNRNPL and its RNA targets are aberrantly expressed in human prostate tumors, supporting their clinical relevance. Collectively, our data reveal HNRNPL and its RNA clients as players in prostate cancer growth and potential therapeutic targets.

Indexed as

CRISPR-Cas SystemsGene Expression Regulation, NeoplasticGenome-Wide Association StudyRNA SplicingCell Line, TumorHeterogeneous-Nuclear Ribonucleoprotein LHumansMaleNeoplasm ProteinsProstatic NeoplasmsRibonucleoproteinsRNA, NeoplasmHeterogeneous-Nuclear Ribonucleoprotein LHNRNPL protein, humanNeoplasm ProteinsRibonucleoproteinsRNA, Neoplasmalternative splicingCRISPR screenHNRNPLprostate cancerRNA binding protein

Identifiers

PMID28611215
PMCPMC5495225
OpenAlexW2625817416

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.