Evidence map›Paper›PMID 28611213›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

Spacer capture and integration by a type I-F Cas1-Cas2-3 CRISPR adaptation complex.

Robert D Fagerlund, Max E Wilkinson, Oleg Klykov, Arjan Barendregt, F Grant Pearce, Sebastian N Kieper, Howard W R Maxwell, Angela Capolupo, Albert J R Heck, Kurt L Krause and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed
7.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed, 105 citations in OpenAlex.

  1. Article
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  6. Whole-genome sequencing ofMicrobial genomics · 2025
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  13. AMicrobiology spectrum · 2022
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  15. Review
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  18. Review
  19. The Involvement of theFrontiers in medicine · 2022
    Article
  20. Article

6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 2 countries.

Robert D FagerlundDepartment of Microbiology and Immunology, University of Otago, Dunedin 9054, New Zealand.
Max E WilkinsonDepartment of Microbiology and Immunology, University of Otago, Dunedin 9054, New Zealand.
Oleg KlykovBiomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, 3584 CH Utrecht, The Netherlands.
Arjan BarendregtBiomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, 3584 CH Utrecht, The Netherlands.
F Grant PearceBiomolecular Interactions Centre, University of Canterbury, Christchurch 8020, New Zealand.
Sebastian N KieperDepartment of Microbiology and Immunology, University of Otago, Dunedin 9054, New Zealand.
Howard W R MaxwellDepartment of Microbiology and Immunology, University of Otago, Dunedin 9054, New Zealand.
Angela CapolupoBiomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, 3584 CH Utrecht, The Netherlands.
Albert J R HeckBiomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, 3584 CH Utrecht, The Netherlands.
Kurt L KrauseDepartment of Biochemistry, University of Otago, Dunedin 9054, New Zealand.
Mihnea BostinaDepartment of Microbiology and Immunology, University of Otago, Dunedin 9054, New Zealand.
Richard A ScheltemaBiomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, 3584 CH Utrecht, The Netherlands.
Raymond H J StaalsDepartment of Microbiology and Immunology, University of Otago, Dunedin 9054, New Zealand.
Peter C FineranDepartment of Microbiology and Immunology, University of Otago, Dunedin 9054, New Zealand; peter.fineran@otago.ac.nz.
University of Otago · NZUtrecht University · NLUniversity of Canterbury · NZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

CRISPR-Cas adaptive immune systems capture DNA fragments from invading bacteriophages and plasmids and integrate them as spacers into bacterial CRISPR arrays. In type I-E and II-A CRISPR-Cas systems, this adaptation process is driven by Cas1-Cas2 complexes. Type I-F systems, however, contain a unique fusion of Cas2, with the type I effector helicase and nuclease for invader destruction, Cas3. By using biochemical, structural, and biophysical methods, we present a structural model of the 400-kDa Cas1

Indexed as

Bacterial ProteinsCRISPR-Cas SystemsEndonucleasesMultienzyme ComplexesPectobacteriumBacterial ProteinsEndonucleasesMultienzyme ComplexesCRISPR-Cashorizontal gene transfermass spectrometryphage resistancespacer acquisition

Identifiers

PMID28611213
PMCPMC5495228
OpenAlexW2626530223

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.