Evidence map›Paper›PMID 28609090›Full record

ArticleJournal of the American Chemical Society2017

Emerging β-Sheet Rich Conformations in Supercompact Huntingtin Exon-1 Mutant Structures.

Hongsuk Kang, Francisco X Vázquez, Leili Zhang, Payel Das, Leticia Toledo-Sherman, Binquan Luan, Michael Levitt, Ruhong Zhou

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 56 citations in OpenAlex.

  1. Development of aniScience · 2026
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  8. A mutagenesis study of autoantigen optimization for potential T1D vaccine design.Proceedings of the National Academy of Sciences of the United States of America · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Hongsuk KangComputational Biology Center, IBM Thomas J. Watson Research Center , Yorktown Heights, New York 10598, United States.
Francisco X VázquezComputational Biology Center, IBM Thomas J. Watson Research Center , Yorktown Heights, New York 10598, United States.
Leili ZhangComputational Biology Center, IBM Thomas J. Watson Research Center , Yorktown Heights, New York 10598, United States.
Payel DasComputational Biology Center, IBM Thomas J. Watson Research Center , Yorktown Heights, New York 10598, United States.ORCID 0000-0002-7288-0516
Leticia Toledo-ShermanCHDI Management/CHDI Foundation , Los Angeles, California 90045, United States.
Binquan LuanComputational Biology Center, IBM Thomas J. Watson Research Center , Yorktown Heights, New York 10598, United States.
Michael LevittDepartment of Structural Biology, Stanford University School of Medicine , Stanford, California 94305, United States.
Ruhong ZhouComputational Biology Center, IBM Thomas J. Watson Research Center , Yorktown Heights, New York 10598, United States.ORCID 0000-0001-8624-5591
IBM Research - Thomas J. Watson Research Center · USCHDI Foundation · USStanford University · US

Funding

Emergent Properties of Complex Systems: From Atoms to Macromolecules; from Humans to SocietiesR35GM122543 · NIGMS · STANFORD UNIVERSITY · PI MICHAEL LEVITT · 2017 to 2026
$5.1M
Hybrid Multiscale Models For Simulating Functional Motion in Macromolecular ComplexesR01GM115749 · NIGMS · STANFORD UNIVERSITY · PI LEVITT, MICHAEL · 2015 to 2016
$624k
NIGMS NIH HHS R01 GM115749NIGMS NIH HHS R35 GM122543
6 · The paper itself

Abstract

There exists strong correlation between the extended polyglutamines (polyQ) within exon-1 of Huntingtin protein (Htt) and age onset of Huntington's disease (HD); however, the underlying molecular mechanism is still poorly understood. Here we apply extensive molecular dynamics simulations to study the folding of Htt-exon-1 across five different polyQ-lengths. We find an increase in secondary structure motifs at longer Q-lengths, including β-sheet content that seems to contribute to the formation of increasingly compact structures. More strikingly, these longer Q-lengths adopt supercompact structures as evidenced by a surprisingly small power-law scaling exponent (0.22) between the radius-of-gyration and Q-length that is substantially below expected values for compact globule structures (∼0.33) and unstructured proteins (∼0.50). Hydrogen bond analyses further revealed that the supercompact behavior of polyQ is mainly due to the "glue-like" behavior of glutamine's side chains with significantly more side chain-side chain H-bonds than regular proteins in the Protein Data Bank (PDB). The orientation of the glutamine side chains also tend to be "buried" inside, explaining why polyQ domains are insoluble on their own.

Indexed as

ExonsHuntingtin ProteinHydrogen BondingModels, MolecularMutationPeptidesProtein AggregatesProtein Conformation, beta-StrandHTT protein, humanHuntingtin ProteinPeptidespolyglutamineProtein Aggregates

Identifiers

PMID28609090
PMCPMC5835228
OpenAlexW2625290192

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.