Evidence map›Paper›PMID 28607512›Full record

ReviewNature reviews. Genetics2017

Network propagation: a universal amplifier of genetic associations.

Lenore Cowen, Trey Ideker, Benjamin J Raphael, Roded Sharan

Abstract readReview
PubMed Publisher
In one paragraph

Review in Nature reviews. Genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 358 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
358citing papers in PubMed, 1 pooled it
29.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

358 citing papers in PubMed, 1 synthesis or guideline pooled it, 718 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Network propagation in bipartite metabolite-reaction graphs for metabolomic data exploration.Metabolomics : Official journal of the Metabolomic Society · 2026
    Article
  8. Article
  9. A Framework for Benchmarking Pathway Reconstruction Algorithms.bioRxiv : the preprint server for biology · 2026
    Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Review
  18. Article
  19. Article
  20. Review

298 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 4 institutions in 2 countries.

Lenore CowenDepartment of Computer Science, Tufts University, Medford, Massachusetts 02155, USA.
Trey IdekerUniversity of California San Diego, La Jolla 92093, California, USA.
Benjamin J RaphaelDepartment of Computer Science, Princeton University, Princeton, New Jersey 08540, USA.
Roded SharanBlavatnik School of Computer Science, Tel Aviv University, Tel Aviv 69978, Israel.
Princeton University · USTel Aviv University · ILTufts University · USUniversity of California, San Diego · US

Funding

TR&D 3 - Network Guided Machine LearningP41GM103504 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI IDEKER, TREY · 2012 to 2024
$17.3M
Pathway and Network Integration of Cancer Genomics and Clinical DataU24CA211000 · NCI · PRINCETON UNIVERSITY · PI RAPHAEL, BENJAMIN, YEH, JEN JEN · 2016 to 2020
$1.7M
Computational Characterization of Genetic HeterogeneityR01HG007069 · NHGRI · PRINCETON UNIVERSITY · PI RAPHAEL, BENJAMIN · 2013 to 2015
$1.1M
NCI NIH HHS U24 CA211000NHGRI NIH HHS R01 HG007069NIGMS NIH HHS P41 GM103504
6 · The paper itself

Abstract

Biological networks are powerful resources for the discovery of genes and genetic modules that drive disease. Fundamental to network analysis is the concept that genes underlying the same phenotype tend to interact; this principle can be used to combine and to amplify signals from individual genes. Recently, numerous bioinformatic techniques have been proposed for genetic analysis using networks, based on random walks, information diffusion and electrical resistance. These approaches have been applied successfully to identify disease genes, genetic modules and drug targets. In fact, all these approaches are variations of a unifying mathematical machinery - network propagation - suggesting that it is a powerful data transformation method of broad utility in genetic research.

Indexed as

Computational BiologyGene Regulatory NetworksGenetic Association StudiesSoftwareAlgorithmsDiseaseHumansProtein Interaction MapsProteinsProteins

Identifiers

PMID28607512
OpenAlexW2624021832

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.