Evidence map›Paper›PMID 28604386›Full record

ArticleThe Journal of clinical investigation2017

Lysine methyltransferase SMYD2 promotes cyst growth in autosomal dominant polycystic kidney disease.

Linda Xiaoyan Li, Lucy X Fan, Julie Xia Zhou, Jared J Grantham, James P Calvet, Julien Sage, Xiaogang Li

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 84 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
84citing papers in PubMed, 3 pooled it
7.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

84 citing papers in PubMed, 3 syntheses or guidelines pooled it, 116 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Targeting Runx1 Slows Cyst Growth in Autosomal Dominant Polycystic Kidney Disease.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2026
    Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Review
  11. Review
  12. Article
  13. Review
  14. SMYD2 Promotes Renal Tubular Cell Apoptosis and Chronic Kidney Disease Following Cisplatin Nephrotoxicity.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2025
    Article
  15. Downregulation of EZH2 Promotes Renal Epithelial Cellular Senescence and Kidney Aging.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2025
    Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Review

24 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Linda Xiaoyan LiDepartment of Internal Medicine.
Lucy X FanDepartment of Internal Medicine.
Julie Xia ZhouDepartment of Internal Medicine.
Jared J GranthamDepartment of Internal Medicine.
James P CalvetKidney Institute, and.
Julien SageDepartment of Pediatrics and Genetics, Stanford University Medical Center, Stanford, California, USA.
Xiaogang LiDepartment of Internal Medicine.
University of Kansas Medical Center · USStanford University · US

Funding

Mentoring CoreP20GM103418 · NIGMS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI Douglas E Wright · 2012 to 2026
$63.0M
UT Southwestern O'Brien Kidney Research Core CenterP30DK079328 · NIDDK · UT SOUTHWESTERN MEDICAL CENTER · PI MOE, ORSON W · 2007 to 2021
$16.9M
Renal Physiology and Phenotyping CoreP30DK079310 · NIDDK · YALE UNIVERSITY · PI ARONSON, PETER S. · 2008 to 2022
$16.8M
Pilot and Feasibility CoreP30DK106912 · NIDDK · UNIVERSITY OF KANSAS MEDICAL CENTER · PI CALVET, JAMES P · 2015 to 2019
$5.5M
Novel Approaches for the Control of Microbial PathogensP30GM103326 · NIGMS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI LUTKENHAUS, JOSEPH F · 2012 to 2016
$5.3M
The RB pathway in liver cancerR01CA114102 · NCI · STANFORD UNIVERSITY · PI SAGE, JULIEN · 2006 to 2016
$2.9M
ADPKD: Understanding mechanisms, Discovering treatments.R01DK084097 · NIDDK · UNIVERSITY OF KANSAS MEDICAL CENTER · PI LI, XIAOGANG · 2010 to 2018
$2.3M
Mechanisms of action of the Smyd3 methyltransferase in cancer cellsR01CA172560 · NCI · STANFORD UNIVERSITY · PI GOZANI, OR P., SAGE, JULIEN · 2013 to 2017
$2.3M
Crosstalk of DNMT1 and Sirt1 in Autosomal Dominant Polycystic Kidney DiseaseK01DK107729 · NIDDK · UNIVERSITY OF KANSAS MEDICAL CENTER · PI ZHOU, XIA · 2016 to 2017
$215k
NCI NIH HHS R01 CA114102NCI NIH HHS R01 CA172560NIDDK NIH HHS K01 DK107729NIDDK NIH HHS P30 DK079310NIDDK NIH HHS P30 DK079328NIDDK NIH HHS P30 DK106912NIDDK NIH HHS R01 DK084097NIGMS NIH HHS P20 GM103418NIGMS NIH HHS P30 GM103326
6 · The paper itself

Abstract

Autosomal dominant polycystic kidney disease (ADPKD) is driven by mutations in PKD1 and PKD2 genes. Recent work suggests that epigenetic modulation of gene expression and protein function may play a role in ADPKD pathogenesis. In this study, we identified SMYD2, a SET and MYND domain protein with lysine methyltransferase activity, as a regulator of renal cyst growth. SMYD2 was upregulated in renal epithelial cells and tissues from Pkd1-knockout mice as well as in ADPKD patients. SMYD2 deficiency delayed renal cyst growth in postnatal kidneys from Pkd1 mutant mice. Pkd1 and Smyd2 double-knockout mice lived longer than Pkd1-knockout mice. Targeting SMYD2 with its specific inhibitor, AZ505, delayed cyst growth in both early- and later-stage Pkd1 conditional knockout mouse models. SMYD2 carried out its function via methylation and activation of STAT3 and the p65 subunit of NF-κB, leading to increased cystic renal epithelial cell proliferation and survival. We further identified two positive feedback loops that integrate epigenetic regulation and renal inflammation in cyst development: SMYD2/IL-6/STAT3/SMYD2 and SMYD2/TNF-α/NF-κB/SMYD2. These pathways provide mechanisms by which SMYD2 might be induced by cyst fluid IL-6 and TNF-α in ADPKD kidneys. The SMYD2 transcriptional target gene Ptpn13 also linked SMYD2 to other PKD-associated signaling pathways, including ERK, mTOR, and Akt signaling, via PTPN13-mediated phosphorylation.

Indexed as

Cell ProliferationEpigenesis, GeneticMAP Kinase Signaling SystemAnimalsBenzoxazinesbeta-AlanineCystsEpithelial CellsHistone-Lysine N-MethyltransferaseMethylationMiceMice, Mutant StrainsPolycystic Kidney, Autosomal DominantProtein Kinase CProtein Tyrosine Phosphatase, Non-Receptor Type 13Proto-Oncogene Proteins c-aktAZ 505Benzoxazinesbeta-AlanineHistone-Lysine N-MethyltransferasemTOR protein, mouseProtein Kinase Cprotein kinase DProtein Tyrosine Phosphatase, Non-Receptor Type 13Proto-Oncogene Proteins c-aktPtpn13 protein, mouseRela protein, mouseSmyd2 protein, mouseStat3 protein, mouseSTAT3 Transcription FactorTOR Serine-Threonine KinasesTranscription Factor RelATRPP Cation Channels

Identifiers

PMID28604386
PMCPMC5490754
OpenAlexW2623336038

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.