Evidence map›Paper›PMID 28602908›Full record

ArticleJournal of biomedical informatics2017

Learning to identify Protected Health Information by integrating knowledge- and data-driven algorithms: A case study on psychiatric evaluation notes.

Azad Dehghan, Aleksandar Kovacevic, George Karystianis, John A Keane, Goran Nenadic

Abstract readValidation Study
In one paragraph

Article in Journal of biomedical informatics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Clinical concept extraction: A methodology review.Journal of biomedical informatics · 2020
    Review
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Azad DehghanSchool of Computer Science, University of Manchester, Manchester, UK; The Christie NHS Foundation Trust, Manchester, UK. Electronic address: azad.dehghan@manchester.ac.uk.
Aleksandar KovacevicFaculty of Technical Sciences, University of Novi Sad, Novi Sad, Serbia. Electronic address: kocha78@uns.ac.rs.
George KarystianisMacquarie University, Australian Institute of Health Innovation, Australia. Electronic address: george.karystianis@mq.edu.au.
John A KeaneSchool of Computer Science, University of Manchester, Manchester, UK; Manchester Institute of Biotechnology, Manchester, UK. Electronic address: john.keane@manchester.ac.uk.
Goran NenadicSchool of Computer Science, University of Manchester, Manchester, UK; Health eResearch Centre, The Farr Institute of Health Informatics Research, UK; Manchester Institute of Biotechnology, Manchester, UK; Mathematical Institute, SANU, Serbia. Electronic address: goran.nenadic@manchester.ac.uk.

Funding

Research ProjectP50MH106933 · NIMH · HARVARD MEDICAL SCHOOL · PI KOHANE, ISAAC S. · 2014 to 2018
$17.0M
Challenges in Natural Language Processing in Clinical TextR13LM011411 · NLM · STATE UNIVERSITY OF NEW YORK AT ALBANY · PI UZUNER, OZLEM · 2012 to 2016
$98k
Medical Research Council MC_PC_13042Medical Research Council MR/K006665/1NIMH NIH HHS P50 MH106933NLM NIH HHS R13 LM011411
6 · The paper itself

Abstract

De-identification of clinical narratives is one of the main obstacles to making healthcare free text available for research. In this paper we describe our experience in expanding and tailoring two existing tools as part of the 2016 CEGS N-GRID Shared Tasks Track 1, which evaluated de-identification methods on a set of psychiatric evaluation notes for up to 25 different types of Protected Health Information (PHI). The methods we used rely on machine learning on either a large or small feature space, with additional strategies, including two-pass tagging and multi-class models, which both proved to be beneficial. The results show that the integration of the proposed methods can identify Health Information Portability and Accountability Act (HIPAA) defined PHIs with overall F

Indexed as

AlgorithmsConfidentialityHealth Insurance Portability and Accountability ActHumansMachine LearningMental DisordersUnited StatesClinical text miningDe-identificationElectronic health recordInformation extractionNamed entity recognition

Identifiers

PMID28602908
PMCPMC5705401

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.