Evidence map›Paper›PMID 28602906›Full record

ArticleJournal of biomedical informatics2017

Counting trees in Random Forests: Predicting symptom severity in psychiatric intake reports.

Elyne Scheurwegs, Madhumita Sushil, Stéphan Tulkens, Walter Daelemans, Kim Luyckx

Abstract read
In one paragraph

Article in Journal of biomedical informatics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 1 synthesis or guideline pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Elyne ScheurwegsUniversity of Antwerp, Computational Linguistics and Psycholinguistics (CLiPS) Research Center, Lange Winkelstraat 40-42, B-2000 Antwerp, Belgium; University of Antwerp, Advanced Database Research and Modelling Research Group (ADReM), Middelheimlaan 1, B-2020 Antwerp, Belgium; Antwerp University Hospital, ICT Department, Wilrijkstraat 10, B-2650 Edegem, Belgium. Electronic address: elyne.scheurwegs@uantwerpen.be.
Madhumita SushilUniversity of Antwerp, Computational Linguistics and Psycholinguistics (CLiPS) Research Center, Lange Winkelstraat 40-42, B-2000 Antwerp, Belgium; Antwerp University Hospital, ICT Department, Wilrijkstraat 10, B-2650 Edegem, Belgium.
Stéphan TulkensUniversity of Antwerp, Computational Linguistics and Psycholinguistics (CLiPS) Research Center, Lange Winkelstraat 40-42, B-2000 Antwerp, Belgium.
Walter DaelemansUniversity of Antwerp, Computational Linguistics and Psycholinguistics (CLiPS) Research Center, Lange Winkelstraat 40-42, B-2000 Antwerp, Belgium.
Kim LuyckxAntwerp University Hospital, ICT Department, Wilrijkstraat 10, B-2650 Edegem, Belgium.

Funding

Research ProjectP50MH106933 · NIMH · HARVARD MEDICAL SCHOOL · PI KOHANE, ISAAC S. · 2014 to 2018
$17.0M
Challenges in Natural Language Processing in Clinical TextR13LM011411 · NLM · STATE UNIVERSITY OF NEW YORK AT ALBANY · PI UZUNER, OZLEM · 2012 to 2016
$98k
NIMH NIH HHS P50 MH106933NLM NIH HHS R13 LM011411
6 · The paper itself

Abstract

The CEGS N-GRID 2016 Shared Task (Filannino et al., 2017) in Clinical Natural Language Processing introduces the assignment of a severity score to a psychiatric symptom, based on a psychiatric intake report. We present a method that employs the inherent interview-like structure of the report to extract relevant information from the report and generate a representation. The representation consists of a restricted set of psychiatric concepts (and the context they occur in), identified using medical concepts defined in UMLS that are directly related to the psychiatric diagnoses present in the Diagnostic and Statistical Manual of Mental Disorders, 4th Edition (DSM-IV) ontology. Random Forests provides a generalization of the extracted, case-specific features in our representation. The best variant presented here scored an inverse mean absolute error (MAE) of 80.64%. A concise concept-based representation, paired with identification of concept certainty and scope (family, patient), shows a robust performance on the task.

Indexed as

AdultAlgorithmsHumansMachine LearningMental DisordersNatural Language ProcessingSeverity of Illness IndexConcept detectionNatural language processingPositive valencePsychiatrySymptom severity identification

Identifiers

PMID28602906
PMCPMC5705466

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.