Evidence map›Paper›PMID 28600723›Full record

ArticleVirus genes2017

The 3D protein of duck hepatitis A virus type 1 binds to a viral genomic 3' UTR and shows RNA-dependent RNA polymerase activity.

Yu Zhang, Qianda Cao, Mingshu Wang, Renyong Jia, Shun Chen, Dekang Zhu, Mafeng Liu, Kunfeng Sun, Qiao Yang, Ying Wu and 3 more

Abstract read
PubMed Publisher
In one paragraph

Article in Virus genes, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 24 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 1 institution in 1 country.

Yu ZhangInstitute of Preventive Veterinary Medicine, Sichuan Agricultural University, Chengdu, 611130, People's Republic of China.
Qianda CaoInstitute of Preventive Veterinary Medicine, Sichuan Agricultural University, Chengdu, 611130, People's Republic of China.
Mingshu WangInstitute of Preventive Veterinary Medicine, Sichuan Agricultural University, Chengdu, 611130, People's Republic of China. mshwang@163.com.
Renyong JiaInstitute of Preventive Veterinary Medicine, Sichuan Agricultural University, Chengdu, 611130, People's Republic of China.
Shun ChenInstitute of Preventive Veterinary Medicine, Sichuan Agricultural University, Chengdu, 611130, People's Republic of China.
Dekang ZhuKey Laboratory of Animal Disease and Human Health of Sichuan Province, Sichuan Agricultural University, Chengdu, 611130, People's Republic of China.
Mafeng LiuInstitute of Preventive Veterinary Medicine, Sichuan Agricultural University, Chengdu, 611130, People's Republic of China.
Kunfeng SunInstitute of Preventive Veterinary Medicine, Sichuan Agricultural University, Chengdu, 611130, People's Republic of China.
Qiao YangInstitute of Preventive Veterinary Medicine, Sichuan Agricultural University, Chengdu, 611130, People's Republic of China.
Ying WuInstitute of Preventive Veterinary Medicine, Sichuan Agricultural University, Chengdu, 611130, People's Republic of China.
Xinxin ZhaoInstitute of Preventive Veterinary Medicine, Sichuan Agricultural University, Chengdu, 611130, People's Republic of China.
Xiaoyue ChenInstitute of Preventive Veterinary Medicine, Sichuan Agricultural University, Chengdu, 611130, People's Republic of China.
Anchun ChengInstitute of Preventive Veterinary Medicine, Sichuan Agricultural University, Chengdu, 611130, People's Republic of China. chenganchun@vip.163.com.
Sichuan Agricultural University · CN

Funding

China Agricultural Research System CARS-43-8Integration and Special Fund for Key Laboratory of Animal Disease and Human Health of Sichuan Province 2016JPT0004National Natural Science Foundation of China 31472223
6 · The paper itself

Abstract

To explore the RNA-dependent RNA polymerase (RdRP) function of the 3D protein of duck hepatitis A virus type 1 (DHAV-1), the gene was cloned into the pET-32a(+) vector for prokaryotic expression. The 3' untranslated region (3' UTR) of DHAV-1 together with a T7 promoter was cloned into the pMD19-T vector for in vitro transcription of 3' UTR RNA, which was further used as a template in RNA-dependent RNA polymerization. In this study, three methods were applied to analyze the RdRP function of the 3D protein: (1) ammonium molybdate spectrophotometry to detect pyrophosphate produced during polymerization; (2) quantitative reverse transcription PCR (RT-qPCR) to investigate the changes in RNA quantity during polymerization; and (3) electrophoresis mobility shift assay to examine the interaction between the 3D protein and 3' UTR. The results showed the 3D protein was successfully expressed in bacteria culture supernatant in a soluble form, which could be purified by affinity chromatography. In 3D enzymatic activity assays, pyrophosphate and RNA were produced, the amounts of which increased based on approximative kinetics, and binding of the 3D protein to the 3' UTR was observed. These results indicate that prokaryotically expressed soluble DHAV-13D protein can bind to a viral genomic 3' UTR and exhibit RdRP activity.

Indexed as

3' Untranslated RegionsAnimalsDucksGenome, ViralGenomicsHepatitis Virus, DuckPicornaviridaePoultry DiseasesPromoter Regions, GeneticRNA-Dependent RNA PolymeraseRNA, ViralViral Proteins3D protein, Hepatitis A virus3' Untranslated RegionsRNA-Dependent RNA PolymeraseRNA, ViralViral Proteins3D protein3′ UTRDHAV-1RdRP activity

Identifiers

PMID28600723
OpenAlexW2622743678

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.