Evidence map›Paper›PMID 28598995›Full record

ArticlePloS one2017

Plant cell wall glycosyltransferases: High-throughput recombinant expression screening and general requirements for these challenging enzymes.

Ditte Hededam Welner, David Shin, Giovani P Tomaleri, Andy M DeGiovanni, Alex Yi-Lin Tsai, Huu M Tran, Sara Fasmer Hansen, Derek T Green, Henrik V Scheller, Paul D Adams

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
7.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 29 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Ditte Hededam WelnerJoint BioEnergy Institute, Emeryville, California, United States of America.ORCID http://orcid.org/0000-0001-9297-4133
David ShinJoint BioEnergy Institute, Emeryville, California, United States of America.
Giovani P TomaleriJoint BioEnergy Institute, Emeryville, California, United States of America.
Andy M DeGiovanniJoint BioEnergy Institute, Emeryville, California, United States of America.
Alex Yi-Lin TsaiJoint BioEnergy Institute, Emeryville, California, United States of America.
Huu M TranJoint BioEnergy Institute, Emeryville, California, United States of America.
Sara Fasmer HansenJoint BioEnergy Institute, Emeryville, California, United States of America.
Derek T GreenJoint BioEnergy Institute, Emeryville, California, United States of America.
Henrik V SchellerJoint BioEnergy Institute, Emeryville, California, United States of America.
Paul D AdamsJoint BioEnergy Institute, Emeryville, California, United States of America.
Lawrence Berkeley National Laboratory · USSandia National Laboratories California · USStar Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Molecular characterization of plant cell wall glycosyltransferases is a critical step towards understanding the biosynthesis of the complex plant cell wall, and ultimately for efficient engineering of biofuel and agricultural crops. The majority of these enzymes have proven very difficult to obtain in the needed amount and purity for such molecular studies, and recombinant cell wall glycosyltransferase production efforts have largely failed. A daunting number of strategies can be employed to overcome this challenge, including optimization of DNA and protein sequences, choice of expression organism, expression conditions, co-expression partners, purification methods, and optimization of protein solubility and stability. Hence researchers are presented with thousands of potential conditions to test. Ultimately, the subset of conditions that will be sampled depends on practical considerations and prior knowledge of the enzyme(s) being studied. We have developed a rational approach to this process. We devise a pipeline comprising in silico selection of targets and construct design, and high-throughput expression screening, target enrichment, and hit identification. We have applied this pipeline to a test set of Arabidopsis thaliana cell wall glycosyltransferases known to be challenging to obtain in soluble form, as well as to a library of cell wall glycosyltransferases from other plants including agricultural and biofuel crops. The screening results suggest that recombinant cell wall glycosyltransferases in general have a very low soluble:insoluble ratio in lysates from heterologous expression cultures, and that co-expression of chaperones as well as lysis buffer optimization can increase this ratio. We have applied the identified preferred conditions to Reversibly Glycosylated Polypeptide 1 from Arabidopsis thaliana, and processed this enzyme to near-purity in unprecedented milligram amounts. The obtained preparation of Reversibly Glycosylated Polypeptide 1 has the expected arabinopyranose mutase and autoglycosylation activities.

Indexed as

Cell WallEnzyme ActivationGene ExpressionGlycosyltransferasesHigh-Throughput Screening AssaysPlant CellsRecombinant ProteinsGlycosyltransferasesRecombinant Proteins

Identifiers

PMID28598995
PMCPMC5466300
OpenAlexW2623244405

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.