Evidence map›Paper›PMID 28598519›Full record

ArticleMolecular ecology2017

Complexities of gene expression patterns in natural populations of an extremophile fish (Poecilia mexicana, Poeciliidae).

Courtney N Passow, Anthony P Brown, Lenin Arias-Rodriguez, Muh-Ching Yee, Alexandra Sockell, Manfred Schartl, Wesley C Warren, Carlos Bustamante, Joanna L Kelley, Michael Tobler

Abstract read
In one paragraph

Article in Molecular ecology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
5.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 25 citations in OpenAlex.

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  7. Local ancestry analysis reveals genomic convergence in extremophile fishes.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 3 countries.

Courtney N PassowDivision of Biology, Kansas State University, Manhattan, KS, USA.
Anthony P BrownDepartment of Biological Sciences, Washington State University, Pullman, WA, USA.ORCID http://orcid.org/0000-0001-6100-2470
Lenin Arias-RodriguezDivisión Académica de Ciencias Biológicas, Universidad Juárez Autónoma de Tabasco, Villahermosa, Tabasco, México.
Muh-Ching YeeDepartment of Genetics, Stanford University, Stanford, CA, USA.
Alexandra SockellDepartment of Genetics, Stanford University, Stanford, CA, USA.
Manfred SchartlPhysiological Chemistry, Biozentrum, University of Würzburg, Würzburg, Germany.
Wesley C WarrenMcDonnell Genome Institute, Washington University in St. Louis, St. Louis, MO, USA.
Carlos BustamanteDepartment of Genetics, Stanford University, Stanford, CA, USA.
Joanna L KelleyDepartment of Biological Sciences, Washington State University, Pullman, WA, USA.ORCID http://orcid.org/0000-0002-7731-605X
Michael ToblerDivision of Biology, Kansas State University, Manhattan, KS, USA.ORCID http://orcid.org/0000-0002-0326-0890
Stanford University · USKansas State University · USWashington State University · USJames S. McDonnell Foundation · USUniversidad Juárez Autónoma de Tabasco · MXUniversity of Würzburg · DE

Funding

INSTITUTIONAL TRAINING GRANT IN GENOME SCIENCET32HG000044 · NHGRI · STANFORD UNIVERSITY · PI MICHAEL P. SNYDER · 1995 to 2026
$32.2M
Whole genome assembly resources for aquatic models of human diseaseR24OD011198 · OD · WASHINGTON UNIVERSITY · PI WARREN, WESLEY CHARLES · 2012 to 2019
$1.4M
NHGRI NIH HHS T32 HG000044NIH HHS R24 OD011198
6 · The paper itself

Abstract

Variation in gene expression can provide insights into organismal responses to environmental stress and physiological mechanisms mediating adaptation to habitats with contrasting environmental conditions. We performed an RNA-sequencing experiment to quantify gene expression patterns in fish adapted to habitats with different combinations of environmental stressors, including the presence of toxic hydrogen sulphide (H

Indexed as

CavesEcosystemGenetics, PopulationHydrogen SulfideAdaptation, PhysiologicalAnimalsExtremophilesGene ExpressionPoeciliaHydrogen Sulfidecavesextreme environmentshydrogen sulphidelocal adaptationpoeciliidaetranscriptomes

Identifiers

PMID28598519
PMCPMC5731456
OpenAlexW2622619921

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.