Evidence map›Paper›PMID 28597849›Full record

ArticleAsian journal of andrology

Association between diacylglycerol kinase kappa variants and hypospadias susceptibility in a Han Chinese population.

Hua Xie, Xiao-Ling Lin, Song Zhang, Ling Yu, Xiao-Xi Li, Yi-Chen Huang, Yi-Qing Lyu, Hai-Tao Chen, Jianfeng Xu, Fang Chen

Open access · goldAbstract read
In one paragraph

Article in Asian journal of andrology. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.8field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Roles of DGKs in neurons: Postsynaptic functions?Advances in biological regulation · 2020
    Review
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Hua XieDepartment of Urology, Shanghai Children's Hospital, Shanghai Jiao Tong University, Shanghai 200062, China.
Xiao-Ling LinFudan Institute of Urology, Huashan Hospital, Fudan University, Shanghai 200040, China.
Song ZhangState Key Laboratory of Genetic Engineering, School of Life Sciences, Fudan University, Shanghai 200433, China.
Ling YuDepartment of Urology, Shanghai Children's Hospital, Shanghai Jiao Tong University, Shanghai 200062, China.
Xiao-Xi LiDepartment of Urology, Shanghai Children's Hospital, Shanghai Jiao Tong University, Shanghai 200062, China.
Yi-Chen HuangDepartment of Urology, Shanghai Children's Hospital, Shanghai Jiao Tong University, Shanghai 200062, China.
Yi-Qing LyuDepartment of Urology, Shanghai Children's Hospital, Shanghai Jiao Tong University, Shanghai 200062, China.
Hai-Tao ChenCenter for Genomic Translational Medicine and Prevention, School of Public Health, Fudan University, Shanghai 200433, China.
Jianfeng XuFudan Institute of Urology, Huashan Hospital, Fudan University, Shanghai 200040, China.
Fang ChenDepartment of Urology, Shanghai Children's Hospital, Shanghai Jiao Tong University, Shanghai 200062, China.
Shanghai Jiao Tong University · CNFudan University · CNHuashan Hospital · CNShanghai Children's Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Previous genome-wide association studies have identified variants in the diacylglycerol kinase kappa (DGKK) gene associated with hypospadias in populations of European descent. However, no variants of DGKK were confirmed to be associated with hypospadias in a recent Han Chinese study population, likely due to the limited number of single-nucleotide polymorphisms (SNPs) included in the analysis. In this study, we aimed to address the inconsistent results and evaluate the association between DGKK and hypospadias in the Han Chinese population through a more comprehensive analysis of DGKK variants. We conducted association analyses for 17 SNPs in or downstream of DGKK with hypospadias among 322 cases (58 mild, 113 moderate, 128 severe, and 23 unknown) and 1008 controls. Five SNPs (rs2211122, rs4554617, rs7058226, rs7063116, and rs5915254) in DGKK were significantly associated with hypospadias (P < 0.05), with odds ratios (ORs) of 1.64-1.76. When only mild and moderate cases were compared to controls, 10 SNPs in DGKK were significant (P < 0.05), with ORs of 1.56-2.13. No significant SNP was observed when only severe cases were compared to controls. This study successfully implicated DGKK variants in hypospadias risk among a Han Chinese population, especially for mild/moderate cases. Severe forms of hypospadias are likely due to other genetic factors.

Indexed as

Asian PeopleCase-Control StudiesChildChinaDiacylglycerol KinaseGenetic Predisposition to DiseaseGenetic VariationGenome-Wide Association StudyHaplotypesHumansHypospadiasLinkage DisequilibriumMalePolymorphism, Single NucleotideRisk AssessmentDGKK protein, humanDiacylglycerol Kinase

Identifiers

PMID28597849
PMCPMC5753560
OpenAlexW2622585538

What OpenQuestion holds

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LicenceCC BY-NC-SA
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.