ArticleRice (New York, N.Y.)2017
Identification of bakanae disease resistance loci in japonica rice through genome wide association study.
Article in Rice (New York, N.Y.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.
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Who cites it
27 citing papers in PubMed, 85 citations in OpenAlex.
- A genome-wide association study of arabinoxylan content in flour of triticale (×Frontiers in plant science · 2026Article
- A Genome‑wide Association Study of the Grain Ionome in Rice Oryza Sativa Ssp. Japonica under Two Diverse Water Management Systems.Rice (New York, N.Y.) · 2025Article
- Regulatory balance between ear rot resistance and grain yield and their breeding applications in maize and other crops.Journal of advanced research · 2025Review
- Early surveillance of rice bakanae disease using deep learning and hyperspectral imaging.aBIOTECH · 2024Article
- Map-Based Cloning and Characterization of a Major QTL Gene,International journal of molecular sciences · 2024Article
- Rice breeding for low input agriculture.Frontiers in plant science · 2024Review
- Genetic potential of grain-related traits in rice landraces: phenomics and multi-locus association analyses.Molecular biology reports · 2023Article
- Identification of qBK2.1, a novel QTL controlling rice resistance against Fusarium fujikuroi.Botanical studies · 2023Article
- OsWRKY114 Is a Player in Rice Immunity againstInternational journal of molecular sciences · 2023Article
- Fine mapping ofFrontiers in plant science · 2023Article
- Current Studies on Bakanae Disease in Rice: Host Range, Molecular Identification, and Disease Management.Mycobiology · 2023Review
- An explanation of the mystifying bakanae disease narrative for tomorrow's rice.Frontiers in microbiology · 2023Review
- Transcriptomic analysis of bakanae disease resistant and susceptible rice genotypes in response to infection by Fusarium fujikuroi.Molecular biology reports · 2022Article
- Meta-analysis of QTLs and candidate genes associated with seed germination in rice (Physiology and molecular biology of plants : an international journal of functional plant biology · 2022Article
- Mapping of a Major QTL,Plants (Basel, Switzerland) · 2021Article
- Assessing Rice Salinity Tolerance: From Phenomics to Association Mapping.Methods in molecular biology (Clifton, N.J.) · 2021Article
- Genome wide association studies for japonica rice resistance to blast in field and controlled conditions.Rice (New York, N.Y.) · 2020Article
- Transcriptome Analysis of Early Defenses in Rice against Fusarium fujikuroi.Rice (New York, N.Y.) · 2020Article
- Genome-wide association mapping of gene loci affecting disease resistance in the rice-Fusarium fujikuroi pathosystem.Rice (New York, N.Y.) · 2019Article
- GWAS for Starch-Related Parameters inPlants (Basel, Switzerland) · 2019Article
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Authors and funding
12 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundBakanae disease, caused by seed-borne Fusarium species, mainly F. fujikuroi, is a rice disease whose importance is considerably increasing in several rice growing countries, leading to incremental production losses.
resultsA germplasm collection of japonica rice was screened for F. fujikuroi resistance, allowing the identification of accessions with high-to-moderate levels of resistance to bakanae. A GWAS approach uncovered two genomic regions highly associated with the observed phenotypic variation for response to bakanae infection on the short arm of chromosome 1 (named as qBK1_628091) and on the long arm of chromosome 4 (named as qBK4_31750955). High levels of phenotypic resistance to bakanae were associated to the cumulated presence of the resistant alleles at the two resistance loci, suggesting that they can provide useful levels of disease protection in resistance breeding. A fine comparison with the genomic positions of qBK1_628091 and qBK4_31750955 with respect to the QTLs for bakanae resistance reported in the literature suggests that the resistant loci here described represent new genomic regions associated to F. fujikuroi resistance. A search for candidate genes with a putative role in bakanae resistance was conducted considering all the annotated genes and F. fujikuroi-related DEGs included in the two genomic regions highlighting several gene functions that could be involved in resistance, thus paving the way to the functional characterization of the resistance loci.
conclusionsNew effective sources for bakanae resistance were identified on rice chromosomes 1 and 4 and tools for resistance breeding are provided.
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