Evidence map›Paper›PMID 28596557›Full record

ArticleScientific reports2017

Burkholderia pseudomallei in a lowland rice paddy: seasonal changes and influence of soil depth and physico-chemical properties.

L Manivanh, A Pierret, S Rattanavong, O Kounnavongsa, Y Buisson, I Elliott, J L Maeght, K Xayyathip, J Silisouk, M Vongsouvath and 6 more

Abstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed.

  1. Biosafety and biosecurity forClinical microbiology reviews · 2026
    Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. The soil microorganismMicrobiology spectrum · 2025
    Article
  8. Article
  9. Article
  10. Genetic diversity, determinants, and dissemination ofbioRxiv : the preprint server for biology · 2023
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Using Land Runoff to Survey the Distribution and Genetic Diversity ofApplied and environmental microbiology · 2021
    Article
  19. Article
  20. Genetic Diversity of Type 3 Secretion System inFrontiers in microbiology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

L ManivanhInstitut de la Francophonie pour la Médecine Tropicale, BP 9519, Vientiane, Lao People's Democratic Republic.
A PierretiEES-Paris (IRD-Sorbonne Universités -UPMC-CNRS-INRA-UDD-UPEC), c/o Department of Agricultural Land Management (DALaM), Vientiane, Lao People's Democratic Republic.
S RattanavongLao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane, Lao People's Democratic Republic.
O KounnavongsaInstitut de la Francophonie pour la Médecine Tropicale, BP 9519, Vientiane, Lao People's Democratic Republic.
Y BuissonInstitut de la Francophonie pour la Médecine Tropicale, BP 9519, Vientiane, Lao People's Democratic Republic.
I ElliottLao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane, Lao People's Democratic Republic.
J L MaeghtiEES-Paris (IRD-Sorbonne Universités -UPMC-CNRS-INRA-UDD-UPEC), c/o Soils and Fertilizers Research Institute (SFRI), Hanoi, Vietnam.
K XayyathipiEES-Paris (IRD-Sorbonne Universités -UPMC-CNRS-INRA-UDD-UPEC), c/o Department of Agricultural Land Management (DALaM), Vientiane, Lao People's Democratic Republic.
J SilisoukLao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane, Lao People's Democratic Republic.
M VongsouvathLao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane, Lao People's Democratic Republic.
R PhetsouvanhLao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane, Lao People's Democratic Republic.
P N NewtonLao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane, Lao People's Democratic Republic.
G LacombeInternational Water Management Institute (IWMI), Southeast Asia Regional Office, PO BOX 4199, Vientiane, Lao People's Democratic Republic.
O RibolziGéosciences Environnement Toulouse - GET (IRD, Université de Toulouse, CNES, CNRS, UPS), 31400, Toulouse, France.
E Rochelle-NewalliEES-Paris (IRD-Sorbonne Universités -UPMC-CNRS-INRA-UDD-UPEC), Université Pierre et Marie-Curie, Paris, France.
D A B DanceLao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane, Lao People's Democratic Republic. david.d@tropmedres.ac.

Funding

Wellcome Trust
6 · The paper itself

Abstract

Melioidosis, a severe infection with the environmental bacterium Burkholderia pseudomallei, is being recognised increasingly frequently. What determines its uneven distribution within endemic areas is poorly understood. We cultured soil from a rice field in Laos for B. pseudomallei at different depths on 4 occasions over a 13-month period. We also measured physical and chemical parameters in order to identify associated characteristics. Overall, 195 of 653 samples (29.7%) yielded B. pseudomallei. A higher prevalence of B. pseudomallei was found at soil depths greater than the 30 cm currently recommended for B. pseudomallei environmental sampling. B. pseudomallei was associated with a high soil water content and low total nitrogen, carbon and organic matter content. Our results suggested that a sampling grid of 25 five metre square quadrats (i.e. 25 × 25 m) should be sufficient to detect B. pseudomallei at a given location if samples are taken at a soil depth of at least 60 cm. However, culture of B. pseudomallei in environmental samples is difficult and liable to variation. Future studies should both rely on molecular approaches and address the micro-heterogeneity of soil when investigating physico-chemical associations with the presence of B. pseudomallei.

Indexed as

BetaproteobacteriaEnvironmental MicrobiologyOryzaSoil MicrobiologyBacterial LoadChemical PhenomenaSeasonsSoilSoil

Identifiers

PMID28596557
PMCPMC5465195

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.